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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11012_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 432aa MW: 48615.1 Da PI: 7.0645 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37.1 | 7e-12 | 251 | 285 | 1 | 35 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilel 35 k+r+rWt+eLH+rFve+v++LGG++ + + l cra_locus_11012_iso_3_len_1748_ver_3 251 KTRIRWTQELHDRFVECVNRLGGADSXVMDIFMSL 285 68**********************98876554444 PP | |||||||
2 | G2-like | 47.3 | 4.6e-15 | 301 | 330 | 26 | 55 |
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk++l+lm+ +gLt+ hvkSHLQkYR cra_locus_11012_iso_3_len_1748_ver_3 301 EATPKAVLKLMDWEGLTIFHVKSHLQKYRN 330 7****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 249 | 331 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-12 | 249 | 276 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-6 | 255 | 329 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.4E-10 | 301 | 331 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.22E-12 | 303 | 330 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 5.3E-19 | 359 | 406 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MDIQKISQQQ RMVQNYGFAG DYTLEFSNRF PQCFGSQQQF PDSGLCFQSP IRDDDGSQKQ 60 NIWPDNSSST MISHIGPPST AFFATERYMG LAQYDSRDNK DSSCCSQLSK NYDIQQQVPS 120 PYEQTGNVFF ADSCAPVEAT FHSKNGLQLV KEGSKSLGSP HLNSDGPYRN PFSNLSEKER 180 ILHLKNKLLG DCDIVNIRRP SVSFDGNQDG VVSCNWYGSH FAQLKQSGRP SACLSLASNN 240 SASSGGILSN KTRIRWTQEL HDRFVECVNR LGGADSXVMD IFMSLLHKTM TIDXFCADHL 300 EATPKAVLKL MDWEGLTIFH VKSHLQKYRN AKYMPDSAEG KSDKRPGTSA APIDIKTGMQ 360 LKEALQLQLD VQRRLHEQLE IQRKLQLSIE EQGRQLKMMI DQQQKTTRSL LETQTSPNPT 420 YLSTTPETMN DS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-18 | 251 | 333 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-18 | 251 | 333 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-18 | 251 | 333 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-18 | 251 | 333 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-18 | 251 | 333 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-18 | 251 | 333 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-18 | 251 | 333 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-18 | 251 | 333 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-18 | 251 | 333 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-18 | 251 | 333 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-18 | 251 | 333 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-18 | 251 | 333 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073078.1 | 1e-158 | myb family transcription factor PHL5-like | ||||
TrEMBL | A0A068UPE8 | 1e-153 | A0A068UPE8_COFCA; Uncharacterized protein | ||||
STRING | XP_009603787.1 | 1e-124 | (Nicotiana tomentosiformis) |