 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_10924_iso_2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 249aa MW: 28916.8 Da PI: 7.5407 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_10924_iso_2 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 96.6 | 1.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
cra_locus_10924_iso_2_len_1091_ver_3 9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
79***********************************************96 PP
|
| 2 | K-box | 110.9 | 1.3e-36 | 78 | 174 | 4 | 99 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75
++ +s + ++ ++ ++ e+ kLk++ie Lqr++R+++GedL+s+sl++Lq+LeqqL+++lk+iRs+Kn+l++e
cra_locus_10924_iso_2_len_1091_ver_3 78 RQLTSnNPDSAQADWTLEYVKLKAKIELLQRNHRQYMGEDLDSMSLRDLQNLEQQLDTALKHIRSRKNQLMYE 150
5555557889999************************************************************ PP
K-box 76 qieelqkkekelqeenkaLrkkle 99
+i+elq+kek++qe+n++L kk++
cra_locus_10924_iso_2_len_1091_ver_3 151 SISELQRKEKAIQEQNNMLAKKIK 174
**********************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 32.576 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 5.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.02E-34 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.21E-43 | 2 | 79 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.0E-30 | 86 | 173 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 17.013 | 89 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009933 | Biological Process | meristem structural organization |
| GO:0010076 | Biological Process | maintenance of floral meristem identity |
| GO:0010582 | Biological Process | floral meristem determinacy |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MGRGKVELKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD 60
SSMEKILERY ERYSYAERQL TSNNPDSAQA DWTLEYVKLK AKIELLQRNH RQYMGEDLDS 120
MSLRDLQNLE QQLDTALKHI RSRKNQLMYE SISELQRKEK AIQEQNNMLA KKIKDKEKIM 180
AEQAQWENQQ NHIPPPPNST SFLLPQQLPP CLNVSGTYEG DETAEEARRN ELDLTLDSLY 240
PCHLGCFAS
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
