PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1080_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 773aa    MW: 84091.1 Da    PI: 5.9675
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1080_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.4e-07351371526
                                          --SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                          +C+ f++ G C++Gd C +aHg
  cra_locus_1080_iso_6_len_2612_ver_3 351 PCPEFRK-GACRRGDMCEYAHG 371
                                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.52E-1478204No hitNo description
SMARTSM00248270079109IPR002110Ankyrin repeat
SuperFamilySSF484033.11E-1588204IPR020683Ankyrin repeat-containing domain
PfamPF127966.3E-9113195IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.3E-16124205IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.326126202IPR020683Ankyrin repeat-containing domain
SMARTSM002480.12126156IPR002110Ankyrin repeat
PRINTSPR014153.5E-5127142IPR002110Ankyrin repeat
SMARTSM002483.9E-4161193IPR002110Ankyrin repeat
PROSITE profilePS5008811.995161196IPR002110Ankyrin repeat
PRINTSPR014153.5E-5180194IPR002110Ankyrin repeat
SMARTSM003569.5E-6346372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981351373IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4351371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4379409IPR000571Zinc finger, CCCH-type
SMARTSM0035668381404IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
XFCFPDKTYV SSFYGFFQHV VMWFPLLDLT IHVLDLLVVD XSMCGGPDKP NSAQSTVPSP  60
ASVESNTKDM SKLRVEIEDS FSSLLEVASS NDVEGFKRMV ERDPLAVDEV GLWLVRKKGT  120
KQIGHEERTP LMVAATYGSV DVLKLIVSLP EVDLNRACGP DKFTALHCAT SGGSVNAVDV  180
VRLLVSAGAD PNVEDANGLR PIDVIVVPPK LLGAKAALEE LLLNNISDGS VGDCNMLLSI  240
TTSNASSPIL SSSPEHGSPC SPSELVSSPV ESKFGDAPVS STFEKKEYPV DPSLPDIKNS  300
IYSTDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGAC  360
RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCARRVCFF AHTTEELRPL YVSTGSAVPS  420
PRSAASAAAV MDMAAALSLL PGSPSSHSVM SPSAFNQPMS PTANGMSHNN VAWSQPNVPT  480
LHLPGSNLQS SRLRSSLSAR DIPPKDLNML QDFDSQQLVL NDLAYFSQPR PNSVSLNRSG  540
RSKTLTPSNL EELFSAEITS SPRYGDQAAA SGIFSPTHKS AVLNQFQQQQ SMLSPINTNV  600
FSPKNVDHSL LQASFGVSSP GRMSPRSMDP ISPMSARLSA LAPREKQYQQ MRSLSARDLG  660
SNSNPTIVGS PVNSWTKWGS PNGKVDWSVN GDEFAQLRKS SSEMNNDGEE PDLSWVQSLV  720
KESSPEMKDE FAAPISVAAS SGEGLKSNSR TDSIDHSVLG AWLEQMQLDQ LVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160883.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A068UH580.0A0A068UH58_COFCA; Uncharacterized protein
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]