PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_10676_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRF

Protein Properties

Length: 593aa MW: 63319.2 Da PI: 8.579

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10676_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.1	8.8e-25	213	257	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e cra_locus_10676_iso_3_len_2032_ver_3 213 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 257 79****************************************985 PP
2	QLQ	62.1	1.4e-21	143	179	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+L+an+P+P +Ll +++k cra_locus_10676_iso_3_len_2032_ver_3 143 GPFTPSQWMELEHQALIYKHLMANVPIPTHLLIPLKK 179 59*******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.3E-13	143	179	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.962	144	179	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	9.4E-16	144	177	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.954	213	257	IPR014977	WRC domain
Pfam	PF08879	3.9E-21	214	256	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MDLGIITTEE GGGGNGPDPF GIDIPKSQGG SGLLKLKRSG SSLQEESWRA SKVPKANEFG 60 IFSQAQSPSL LRSGSMIPTS NGQTMISFSS QSQAPLFPDE DAAKTSAIPF FLSPQESLSS 120 RASVYAAEKT TEGIRGPFAR FRGPFTPSQW MELEHQALIY KHLMANVPIP THLLIPLKKA 180 FNPYAFSSFS SGSYSSSSLG WGSFHLGFAG STDPEPGRCR RTDGKKWRCS RDAVPDQKYC 240 ERHINRGRHR SRKPVEGQTG HAVSGTTASK VAPNASSSSA SVMSSSSNAT NNCLGSAQHQ 300 FKNLQPGAAN TSTEHLVGRA QDLQSLSVLG DAMNMKSKDT SFSTQKSNAL LGGSNLPEFG 360 LVSPDSLLNP SQRNSRMNSR NSHSFPSFND QEEQGQHPLR HFIDNWPKDQ SDRASVSWPE 420 ELKSDWTQLS MSIPMSSSDF SSSSNSPPQE KPTLSPLRLA REIDPIQMGL SVNNNNLNLG 480 EPNQRQSTWL PVSWGNSVGG PLGEVLNSTS YNVGASKDSS AAAALNLMMD GSSPQMGCSP 540 TGVLQKTTFV SLSNSSSGSS PRTDDKKGSK GAASLCDDLL GSNLANSAPI SSV

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MDLGIITTEE GGGGNGPDPF GIDIPKSQGG SGLLKLKRSG SSLQEESWRA SKVPKANEFG  60
IFSQAQSPSL LRSGSMIPTS NGQTMISFSS QSQAPLFPDE DAAKTSAIPF FLSPQESLSS  120
RASVYAAEKT TEGIRGPFAR FRGPFTPSQW MELEHQALIY KHLMANVPIP THLLIPLKKA  180
FNPYAFSSFS SGSYSSSSLG WGSFHLGFAG STDPEPGRCR RTDGKKWRCS RDAVPDQKYC  240
ERHINRGRHR SRKPVEGQTG HAVSGTTASK VAPNASSSSA SVMSSSSNAT NNCLGSAQHQ  300
FKNLQPGAAN TSTEHLVGRA QDLQSLSVLG DAMNMKSKDT SFSTQKSNAL LGGSNLPEFG  360
LVSPDSLLNP SQRNSRMNSR NSHSFPSFND QEEQGQHPLR HFIDNWPKDQ SDRASVSWPE  420
ELKSDWTQLS MSIPMSSSDF SSSSNSPPQE KPTLSPLRLA REIDPIQMGL SVNNNNLNLG  480
EPNQRQSTWL PVSWGNSVGG PLGEVLNSTS YNVGASKDSS AAAALNLMMD GSSPQMGCSP  540
TGVLQKTTFV SLSNSSSGSS PRTDDKKGSK GAASLCDDLL GSNLANSAPI SSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027076603.1	0.0	growth-regulating factor 1-like isoform X1
TrEMBL	A0A068U264	0.0	A0A068U264_COFCA; Uncharacterized protein
STRING	XP_009589483.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1688	23	57