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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10450_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 185aa MW: 21511.7 Da PI: 4.5179 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.2 | 5.8e-18 | 15 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkk..vegkk..leleevikev.diykvePwdLp.kkvkaeek.ewyfFskrdkky 68 p G++F P++e l+ +y k + + + + l+l +vi+++ ++y+++P ++p +k+ ++ + ew+fF+++++ cra_locus_10450_iso_4_len_670_ver_3 15 PLGYKFFPSEEILM-DYVKLRngIVDGTrkLPL-HVIPTIeNLYSFNPDQIPfHKFIGGVEgEWFFFTNSRSD- 85 78******987776.775544234444434555.78999989**********755555555599999998765. PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +n +t +gyW+ + e+ +++ +glk+t++f+ g ++g++++ ++hey+l cra_locus_10450_iso_4_len_670_ver_3 86 ----DHNLVTPNGYWHPKTLPIEIEL-ENTIIGLKQTFTFHWGIPSNGKESKFLIHEYKL 140 ....56889***************99.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-20 | 13 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.485 | 14 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-11 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
XKKEDEEEEI KLPPPLGYKF FPSEEILMDY VKLRNGIVDG TRKLPLHVIP TIENLYSFNP 60 DQIPFHKFIG GVEGEWFFFT NSRSDDHNLV TPNGYWHPKT LPIEIELENT IIGLKQTFTF 120 HWGIPSNGKE SKFLIHEYKL NKEGGNFVAC RVRDMEAFSK GQKEEEDWNS DFGEVHEGDS 180 EDDEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-13 | 2 | 140 | 5 | 140 | Stress-induced transcription factor NAC1 |