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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10450_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 142aa MW: 16439.8 Da PI: 4.3449 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.6 | 5.7e-11 | 30 | 97 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e ew+fF+++++ +n +t +gyW+ + e+ +++ +glk+t++f+ g ++g++++ ++hey+l cra_locus_10450_iso_3_len_709_ver_3 30 EGEWFFFTNSRSD-----DHNLVTPNGYWHPKTLPIEIEL-ENTIIGLKQTFTFHWGIPSNGKESKFLIHEYKL 97 4599999998765.....56889***************99.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.663 | 1 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-8 | 22 | 97 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-12 | 30 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MASSSSRSKD QKNDEKKEDE EEEKFIGGVE GEWFFFTNSR SDDHNLVTPN GYWHPKTLPI 60 EIELENTIIG LKQTFTFHWG IPSNGKESKF LIHEYKLNKE GGNFVACRVR DMEAFSKGQK 120 EEEDWNSDFG EVHEGDSEDD EN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027177580.1 | 2e-20 | NAC domain-containing protein 41-like |