PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1044_iso_9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | VOZ | ||||||||
Protein Properties | Length: 487aa MW: 54303.9 Da PI: 5.6401 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 423.3 | 3.8e-130 | 208 | 427 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvq 71 ppp+aflgpkcalwdc+rpaq ew+ qdycss+hat+a eg pg++pvlrp+gi+lkd+llfaalsak+q cra_locus_1044_iso_9_len_2142_ver_3 208 PPPAAFLGPKCALWDCPRPAQRLEWCqtsQDYCSSYHATIAPAEGYPGMAPVLRPGGIGLKDNLLFAALSAKAQ 281 89***********************944459******************************************* PP VOZ 72 gkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm 145 g++vgipecegaat+kspwna+elfdl++legetirewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm cra_locus_1044_iso_9_len_2142_ver_3 282 GRDVGIPECEGAATTKSPWNAPELFDLAVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVM 355 ************************************************************************** PP VOZ 146 kefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 +efgglkrsyymdpqp++s+ewhlyeyein++d +alyrlelklvd+kks+kgkv++ds++dlqk++ +lta cra_locus_1044_iso_9_len_2142_ver_3 356 NEFGGLKRSYYMDPQPMKSYEWHLYEYEINKYDVCALYRLELKLVDGKKSPKGKVANDSVSDLQKQMKKLTA 427 **********************************************************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
XAGGIHKALE EXVMGRVGLW VTIHSKEKEK NRSREESSNS HSFTIVHIYN RTQELLFSLS 60 PNSDQSLFKQ GDNXVESYLN PPPASSLQGG SLGSFSSDIY RLLQLCEEED DATSSLTPPK 120 SEPGIQKVDG GAAFQEEQSF HLLDQCKNTP GANTMGISNM GVAAPLDYHP FDLHQDFEHQ 180 YFTGFEGTGI CGEDALSQIP NFAQNFCPPP AAFLGPKCAL WDCPRPAQRL EWCQTSQDYC 240 SSYHATIAPA EGYPGMAPVL RPGGIGLKDN LLFAALSAKA QGRDVGIPEC EGAATTKSPW 300 NAPELFDLAV LEGETIREWL FFDKPRRAFE SGNRKQRSLP DYNGRGWHES RKQVMNEFGG 360 LKRSYYMDPQ PMKSYEWHLY EYEINKYDVC ALYRLELKLV DGKKSPKGKV ANDSVSDLQK 420 QMKKLTAEFP SDNKRTVKGN SKANTKDVNG SIHSNPNRMP QTNEAFDYGT GAPFEYLVDN 480 LNGYYIT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027111836.1 | 0.0 | transcription factor VOZ1-like | ||||
Refseq | XP_027111837.1 | 0.0 | transcription factor VOZ1-like | ||||
Refseq | XP_027111838.1 | 0.0 | transcription factor VOZ1-like | ||||
Refseq | XP_027111839.1 | 0.0 | transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-180 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A068TU11 | 0.0 | A0A068TU11_COFCA; Uncharacterized protein | ||||
STRING | VIT_10s0003g00500.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2818 | 24 | 54 |
Publications ? help Back to Top | |||
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