PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1044_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | VOZ | ||||||||
Protein Properties | Length: 473aa MW: 52624.9 Da PI: 5.8572 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 423.4 | 3.5e-130 | 194 | 413 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvq 71 ppp+aflgpkcalwdc+rpaq ew+ qdycss+hat+a eg pg++pvlrp+gi+lkd+llfaalsak+q cra_locus_1044_iso_4_len_2324_ver_3 194 PPPAAFLGPKCALWDCPRPAQRLEWCqtsQDYCSSYHATIAPAEGYPGMAPVLRPGGIGLKDNLLFAALSAKAQ 267 89***********************944459******************************************* PP VOZ 72 gkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm 145 g++vgipecegaat+kspwna+elfdl++legetirewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm cra_locus_1044_iso_4_len_2324_ver_3 268 GRDVGIPECEGAATTKSPWNAPELFDLAVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVM 341 ************************************************************************** PP VOZ 146 kefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 +efgglkrsyymdpqp++s+ewhlyeyein++d +alyrlelklvd+kks+kgkv++ds++dlqk++ +lta cra_locus_1044_iso_4_len_2324_ver_3 342 NEFGGLKRSYYMDPQPMKSYEWHLYEYEINKYDVCALYRLELKLVDGKKSPKGKVANDSVSDLQKQMKKLTA 413 **********************************************************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MGKGSKSGAC KSASHQLFKD RAKNRVDDLQ GMFSDLQSAR KESRTIDVAV LEEQVHQMLR 60 EWKAELNEPS PASSLQGGSL GSFSSDIYRL LQLCEEEDDA TSSLTPPKSE PGIQKVDGGA 120 AFQESFHLLD QCKNTPGANT MGISNMGVAA PLDYHPFDLH QDFEHQYFTG FEGTGICGED 180 ALSQIPNFAQ NFCPPPAAFL GPKCALWDCP RPAQRLEWCQ TSQDYCSSYH ATIAPAEGYP 240 GMAPVLRPGG IGLKDNLLFA ALSAKAQGRD VGIPECEGAA TTKSPWNAPE LFDLAVLEGE 300 TIREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQV MNEFGGLKRS YYMDPQPMKS 360 YEWHLYEYEI NKYDVCALYR LELKLVDGKK SPKGKVANDS VSDLQKQMKK LTAEFPSDNK 420 RTVKGNSKAN TKDVNGSIHS NPNRMPQTNE AFDYGTGAPF EYLVDNLNGY YIT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105411.1 | 0.0 | transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A068TU11 | 0.0 | A0A068TU11_COFCA; Uncharacterized protein | ||||
STRING | VIT_10s0003g00500.t01 | 0.0 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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