PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

cra_locus_1044_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

VOZ

Protein Properties

Length: 482aa MW: 53629.6 Da PI: 5.6812

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1044_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	423.4	3.7e-130	196	415	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvq 71 ppp+aflgpkcalwdc+rpaq ew+ qdycss+hat+a eg pg++pvlrp+gi+lkd+llfaalsak+q cra_locus_1044_iso_1_len_1666_ver_3 196 PPPAAFLGPKCALWDCPRPAQRLEWCqtsQDYCSSYHATIAPAEGYPGMAPVLRPGGIGLKDNLLFAALSAKAQ 269 89*********************944459*************************************** PP VOZ 72 gkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm 145 g++vgipecegaat+kspwna+elfdl++legetirewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm cra_locus_1044_iso_1_len_1666_ver_3 270 GRDVGIPECEGAATTKSPWNAPELFDLAVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVM 343 ********************************************************************** PP VOZ 146 kefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 +efgglkrsyymdpqp++s+ewhlyeyein++d +alyrlelklvd+kks+kgkv++ds++dlqk++ +lta cra_locus_1044_iso_1_len_1666_ver_3 344 NEFGGLKRSYYMDPQPMKSYEWHLYEYEINKYDVCALYRLELKLVDGKKSPKGKVANDSVSDLQKQMKKLTA 415 ********************************************************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MGKGSKSGAC KSASHQLFKD RAKNRVDDLQ GMFSDLQSAR KESRTIDVAV LEEQVHQMLR 60 EWKAELNEPS PASSLQGGSL GSFSSDIYRL LQLCEEEDDA TSSLTPPKSE PGIQKVDGGA 120 AFQEEQSFHL LDQCKNTPGA NTMGISNMGV AAPLDYHPFD LHQDFEHQYF TGFEGTGICG 180 EDALSQIPNF AQNFCPPPAA FLGPKCALWD CPRPAQRLEW CQTSQDYCSS YHATIAPAEG 240 YPGMAPVLRP GGIGLKDNLL FAALSAKAQG RDVGIPECEG AATTKSPWNA PELFDLAVLE 300 GETIREWLFF DKPRRAFESG NRKQRSLPDY NGRGWHESRK QVMNEFGGLK RSYYMDPQPM 360 KSYEWHLYEY EINKYDVCAL YRLELKLVDG KKSPKGKVAN DSVSDLQKQM KKLTAEFPSD 420 NKRTVKGNSK ANTKDVNGSI HSNPNRMPQT NEAFDYGTGA PFEYLVDNLN GYYISCCLXF 480 GX

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MGKGSKSGAC KSASHQLFKD RAKNRVDDLQ GMFSDLQSAR KESRTIDVAV LEEQVHQMLR  60
EWKAELNEPS PASSLQGGSL GSFSSDIYRL LQLCEEEDDA TSSLTPPKSE PGIQKVDGGA  120
AFQEEQSFHL LDQCKNTPGA NTMGISNMGV AAPLDYHPFD LHQDFEHQYF TGFEGTGICG  180
EDALSQIPNF AQNFCPPPAA FLGPKCALWD CPRPAQRLEW CQTSQDYCSS YHATIAPAEG  240
YPGMAPVLRP GGIGLKDNLL FAALSAKAQG RDVGIPECEG AATTKSPWNA PELFDLAVLE  300
GETIREWLFF DKPRRAFESG NRKQRSLPDY NGRGWHESRK QVMNEFGGLK RSYYMDPQPM  360
KSYEWHLYEY EINKYDVCAL YRLELKLVDG KKSPKGKVAN DSVSDLQKQM KKLTAEFPSD  420
NKRTVKGNSK ANTKDVNGSI HSNPNRMPQT NEAFDYGTGA PFEYLVDNLN GYYISCCLXF  480
GX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105411.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A068TU11	0.0	A0A068TU11_COFCA; Uncharacterized protein
STRING	VIT_10s0003g00500.t01	0.0	(Vitis vinifera)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]