PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_10372_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARF
Protein Properties Length: 737aa    MW: 80929.3 Da    PI: 7.2557
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_10372_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.6e-24112213199
                                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66 
                                           f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+
  cra_locus_10372_iso_1_len_2742_ver_3 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGETWKFRHIYRGTPRRHLLTTGWS 182
                                           89****************************997556555..8******************************* PP

                                           HHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                    B3  67 eFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                            Fv++++L +gD++vF   + +++ l+v+++r+
  cra_locus_10372_iso_1_len_2742_ver_3 183 TFVNQKKLVAGDSIVFL--RAENGDLCVGIRRA 213
                                           *****************..4488999****997 PP
2Auxin_resp1156.6e-38282365183
                            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpv 72 
                                           aa+ a+++++FevvY+Prast+eF vk+++v++a++v++++GmRfkm fetedss++++ +Gt+++v+ +dp+
  cra_locus_10372_iso_1_len_2742_ver_3 282 AASLAASGQPFEVVYYPRASTPEFFVKASSVSSAMRVQWCAGMRFKMPFETEDSSRISWfMGTIASVQVADPI 354
                                           688999******************************************************************* PP

                            Auxin_resp  73 rWpnSkWrsLk 83 
                                           rWpnS+Wr+L+
  cra_locus_10372_iso_1_len_2742_ver_3 355 RWPNSPWRLLQ 365
                                           *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-38103220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-29104213IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-21111212No hitNo description
PROSITE profilePS5086313.239112214IPR003340B3 DNA binding domain
SMARTSM010191.0E-22112214IPR003340B3 DNA binding domain
PfamPF023623.7E-22112213IPR003340B3 DNA binding domain
PfamPF065071.3E-32282365IPR010525Auxin response factor
PROSITE profilePS5174514.951594675IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MVEKSLDSQL WHACAGGMVQ MPSVNSKVFY FSQGHAEHTL SNVDFAGMPR IPAVILCRVS  60
AVKFLADPET DEVFARIRLI PIGNNEGYEF EDDSCMGNTN GSESSADKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVVAKDVHGE TWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGGIGG PESSSGWNSA AGNYGSFSVF  240
LREEENKLMR SGGSNGNLNS SAGGGGNLKG RGRARPESVI EAASLAASGQ PFEVVYYPRA  300
STPEFFVKAS SVSSAMRVQW CAGMRFKMPF ETEDSSRISW FMGTIASVQV ADPIRWPNSP  360
WRLLQVTWDE PDLLQNVKRV NPWLVELVSN MPVIHLSPFS PPRKKLRIPQ HSEFPLDGQF  420
PMPSFSGNPF GPSSPLCCPS DNISAGIQGA RHAQFGVPLL DLHLSNKMHL GLIPPSFQRL  480
DPLTKIPDGL IHGHLEGGDD VSCLLTMGNS NQKLEKTDAV KNPDSCLFGQ PILTEQQMSH  540
SCSSDALSQA GKSSSCVISP PKAERFTLDQ TENIPNTGFL RNRSRHSVDI GLDTGHCKVF  600
LESEDVGRTL DLSVVGSYEE LYKRLGNMFG IERSEMESNV FYRDATGALK QTGDEPFRYM  660
FCLXQNTLII YEMFHIPNGH LFPFAVTCSE FMKTAKRLTI HKNSGNNTIG RKWITGLPSG  720
ERGLDSSNQT GPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-80638651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085933.10.0auxin response factor 18-like
RefseqXP_027085940.10.0auxin response factor 18-like
RefseqXP_027085948.10.0auxin response factor 18-like
RefseqXP_027085957.10.0auxin response factor 18-like
RefseqXP_027085965.10.0auxin response factor 18-like
RefseqXP_027085973.10.0auxin response factor 18-like
RefseqXP_027085983.10.0auxin response factor 18-like
RefseqXP_027085989.10.0auxin response factor 18-like
RefseqXP_027085998.10.0auxin response factor 18-like
RefseqXP_027182473.10.0auxin response factor 18
RefseqXP_027182479.10.0auxin response factor 18
RefseqXP_027182486.10.0auxin response factor 18
RefseqXP_027182494.10.0auxin response factor 18
RefseqXP_027182500.10.0auxin response factor 18
RefseqXP_027182508.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A068UFQ30.0A0A068UFQ3_COFCA; Auxin response factor
STRINGXP_009602946.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]