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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_10206_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 306aa MW: 34075.2 Da PI: 8.2735 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.9 | 2.1e-32 | 74 | 130 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + v+Y+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e cra_locus_10206_iso_4_len_1639_ver_3 74 KMVKYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEIEG 130 6799*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.9E-29 | 76 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-26 | 76 | 131 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-31 | 77 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.559 | 78 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.29E-18 | 223 | 292 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-30 | 225 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-26 | 231 | 287 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MELPSQEGEM PIPLNSTYGG HMIHHDHSSS TVVPSQMPNS SNNNGPISSN NNNLDQDLHH 60 HNQNHHNVVV NFKKMVKYRE CLKNHAAAMG GNATDGCGEF MPSGEEGTIE ALTCSACNCH 120 RNFHRKEIEG EPSSCDYCYS SPPHLNRING RKLVLGHHHH HHKAILGAEP LGYPIPSRTA 180 APIVPHHPMI MSYNMAGSLP SESDEQEEGG HGGGGGHGGV LVRPSHHQLV KKRFRTKFSQ 240 EQKEKMLNFA EKVGWKIQKQ EEGVVQQFCQ EVGVKRRVLK VWMHNNKHNL AKKNNNNISI 300 NPQSQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-23 | 232 | 289 | 18 | 75 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015578866.1 | 1e-127 | zinc-finger homeodomain protein 3 | ||||
Swissprot | O64722 | 9e-79 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
Swissprot | Q9M9S0 | 1e-78 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A068TN67 | 1e-129 | A0A068TN67_COFCA; Uncharacterized protein | ||||
STRING | XP_002525870.1 | 1e-126 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Publications ? help Back to Top | |||
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