PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold25083-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family DBB
Protein Properties Length: 207aa    MW: 22882.3 Da    PI: 4.8081
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold25083-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06346441
                                              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                                           +C+ +e+ e++  C  ++  lC++C  + H        H++v 
  augustus_masked-scaffold25083-abinit-gene-0.0-mRNA-1  3 IRCDVCEKVEAEVLCCADEAVLCRECDGKVHAAnklsqkHERVL 46
                                                          58******99*******************9*6677888888765 PP
2zf-B_box29.71.4e-0962103237
                                              zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                                                           + + C++++e    lfC +++  lC +C +++Hkg      H
  augustus_masked-scaffold25083-abinit-gene-0.0-mRNA-1  62 QLPPCDLCQERIGYLFCLEDRASLCTNCDVSTHKGslhassH 103
                                                           6789******9999*******************998855555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.385147IPR000315B-box-type zinc finger
CDDcd000213.06E-6347No hitNo description
SMARTSM003361.2E-7447IPR000315B-box-type zinc finger
SMARTSM003363.5E-761108IPR000315B-box-type zinc finger
PfamPF006432.0E-66399IPR000315B-box-type zinc finger
CDDcd000211.05E-664107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKIRCDVCEK VEAEVLCCAD EAVLCRECDG KVHAANKLSQ KHERVLLKQP SSSSSFSSSN  60
VQLPPCDLCQ ERIGYLFCLE DRASLCTNCD VSTHKGSLHA SSHQRFLNSG IHVALHSSID  120
NNINTGFNSR NSSLPMPETS FNFLDDNESR TAMTMEVEAG STETRATFSG ETHLETEPSW  180
SLDEIFDPNN LNYYDFSGVG SSRISSQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834173.15e-83PREDICTED: B-box zinc finger protein 23
SwissprotQ9SYM21e-39BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2N9J8581e-114A0A2N9J858_FAGSY; Uncharacterized protein
STRINGVIT_18s0089g01280.t012e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1837746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.12e-40DBB family protein