PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold17423-abinit-gene-0.1-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20163.3 Da PI: 5.0889 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 21 | 72 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GVr +k +g+Wv+eIr+p gk++r++lg+f t+e+Aa+a++ a++ ++g+ augustus_masked-scaffold17423-abinit-gene-0.1-mRNA-1 21 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRGH 72 67*****999.**********8...557***********************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.15E-23 | 21 | 80 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-13 | 21 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.45E-23 | 21 | 81 | No hit | No description |
PROSITE profile | PS51032 | 23.551 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 22 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-39 | 22 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEEEPNSSGN TSSTSHGAAS SSYRGVRKRK WGKWVSEIRE PGKKTRIWLG SFETPEMAAA 60 AYDVAALHFR GHEARLNFPE LVHSLPRPAS SNSEHIRMAA HEAALRLRGS QGVAEVGGGS 120 SSNMAPVTVR LSPSQIEAIN EFPLDSPSKM WMQTAMEESM TFSNDIEDNE WEDMQNDSLW 180 DP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-18 | 18 | 84 | 1 | 68 | ATERF1 |
3gcc_A | 4e-18 | 18 | 84 | 1 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023882172.1 | 1e-120 | ethylene-responsive transcription factor ERF021-like | ||||
Refseq | XP_023885779.1 | 1e-120 | ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9C9I2 | 9e-71 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A2N9GI64 | 1e-100 | A0A2N9GI64_FAGSY; Uncharacterized protein | ||||
STRING | EMJ24784 | 6e-83 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 4e-72 | ERF family protein |