PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold15802-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 282aa    MW: 31066.8 Da    PI: 6.5138
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold15802-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY110.38.9e-3590146259
                                                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                                           dDgynWrKYGqK+vkgsefprsYY+Ct++gCpvkkkvers  d++v+ei+Y+g+Hnh
  augustus_masked-scaffold15802-abinit-gene-0.0-mRNA-1  90 DDGYNWRKYGQKQVKGSEFPRSYYKCTFSGCPVKKKVERSL-DGQVTEIIYKGQHNH 145
                                                           8****************************************.*************** PP

                                                           - CS
                                                  WRKY  59 e 59 
                                                           +
  augustus_masked-scaffold15802-abinit-gene-0.0-mRNA-1 146 Q 146
                                                           8 PP
2WRKY32.81.3e-10262282121
                                                           ---SS-EEEEEEE--TT-SS- CS
                                                  WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                                                           ldDgy+WrKYGqK+vkg+++p
  augustus_masked-scaffold15802-abinit-gene-0.0-mRNA-1 262 LDDGYRWRKYGQKVVKGNPYP 282
                                                           59*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3081148IPR003657WRKY domain
PROSITE profilePS5081124.59384148IPR003657WRKY domain
SuperFamilySSF1182901.11E-2687148IPR003657WRKY domain
SMARTSM007743.1E-3889147IPR003657WRKY domain
PfamPF031068.7E-2790146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-12247282IPR003657WRKY domain
SuperFamilySSF1182906.02E-9254282IPR003657WRKY domain
PROSITE profilePS5081115.617257282IPR003657WRKY domain
PfamPF031062.1E-6263282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTHQQALAQV TAQAAQAHTH VHIQADYSSS LSAAPATSLT QLPAFTTNTT AHQQVPPSIP  60
DSGVANQSSD FSHFDQRSQP STYAVDKPAD DGYNWRKYGQ KQVKGSEFPR SYYKCTFSGC  120
PVKKKVERSL DGQVTEIIYK GQHNHQPPQK RTKDTGNSNQ GNPDFASQVQ SGNLNKLKEG  180
TGLYLVSKKD QESSQATPEH LSGTSDSEEV GDAETGVDEK DEDEPEAKRQ STEVRVSEPA  240
SSHRTVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP YP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-18891481474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880982.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-107WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2I4FXJ51e-166A0A2I4FXJ5_JUGRE; probable WRKY transcription factor 4
STRINGXP_008221558.11e-144(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-98WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]