PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold11930-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 172aa    MW: 19496 Da    PI: 4.9194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold11930-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-181362255
                                                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                           y+GVr++k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  augustus_masked-scaffold11930-abinit-gene-0.0-mRNA-1 13 TYRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYEAPEMAAAAYDVAALHLRG 62
                                                          69****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-221371IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-311371IPR001471AP2/ERF domain
SMARTSM003801.1E-351376IPR001471AP2/ERF domain
PROSITE profilePS5103223.1691370IPR001471AP2/ERF domain
PfamPF008472.5E-121362IPR001471AP2/ERF domain
CDDcd000183.10E-211472No hitNo description
PRINTSPR003678.7E-131425IPR001471AP2/ERF domain
PRINTSPR003678.7E-135272IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEEPTNPNVV APTYRGVRRR KWGKWVSEIR EPGKKTRIWL GSYEAPEMAA AAYDVAALHL  60
RGRGARLNFP ELVDSLPRPK SSRAEDVQMA AQEAALRFRR PEMGSSGANV MPVRVGLSPS  120
QIQAINESPL DSPKTWMELT GALLFEENMV LYDNNVEFSD WEELQYESIW DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-161475668ATERF1
3gcc_A6e-161475668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882723.11e-122ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I22e-54ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2N9I7381e-103A0A2N9I738_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s10430.12e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.19e-54ERF family protein