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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold11265-abinit-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28114.2 Da PI: 4.3416 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.9e-19 | 72 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r k+ +lg+f+ta++Aa a+++a+++++g augustus_masked-scaffold11265-abinit-gene-0.3-mRNA-1 72 CNYRGVRQRT-WGKWVAEIREP---N-RgKKLWLGTFDTADDAASAYDEAARAIYG 122 56*****999.**********8...3.35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.38E-33 | 72 | 132 | No hit | No description |
Pfam | PF00847 | 1.4E-12 | 72 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-37 | 73 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 73 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.379 | 73 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-22 | 73 | 132 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.5E-10 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVYLDQGVPM ESSKKRKTRG EGLSVTETLA KWRDYNAQLQ SSGGDVKRTR KLSKGPKKGC 60 MKGKGGPENS GCNYRGVRQR TWGKWVAEIR EPNRGKKLWL GTFDTADDAA SAYDEAARAI 120 YGASARLNFP ESVSTVLGPT PAGFEASADE EIHYAVTEAA SLVETDVKDE STAMPSTSSL 180 VKDESTGDSE QKELLAFSEY ELFDDAELMA LLKDIPPDFT DSVLDFGFDV NQLGFPDVEV 240 DMPSLVDTEG KDELVNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 71 | 135 | 3 | 68 | ATERF1 |
3gcc_A | 2e-18 | 71 | 135 | 3 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023897506.1 | 1e-149 | dehydration-responsive element-binding protein 2A-like | ||||
Swissprot | Q8LFR2 | 8e-45 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A2N9GRQ3 | 5e-63 | A0A2N9GRQ3_FAGSY; Uncharacterized protein | ||||
STRING | Bo4g190040.1 | 5e-51 | (Brassica oleracea) | ||||
STRING | XP_002520794.1 | 9e-51 | (Ricinus communis) | ||||
STRING | XP_004293490.1 | 1e-51 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11020.1 | 2e-29 | DRE/CRT-binding protein 2B |
Publications ? help Back to Top | |||
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