PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold11095-abinit-gene-0.1-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 411aa MW: 45772.7 Da PI: 9.6492 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 233 | 283 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+ge augustus_masked-scaffold11095-abinit-gene-0.1-mRNA-1 233 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYMLRGE 283 59******9.**********955...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.34E-32 | 232 | 292 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 233 | 290 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 233 | 292 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-23 | 233 | 291 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.0E-36 | 233 | 296 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 234 | 245 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-14 | 234 | 283 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 256 | 272 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MEDQFPKMET FTQQELPSYM ASGSNIFGDP IMWRALTQSF CYHHGGMKSS LLASSPDRRF 60 SCWESSSSKG EASDINLPTS IPGFTKQNVH KHHTSPLLSA ASAKESFIPV NFLDTFPKLS 120 QAQASTPSSP SSLSTTSKFP NLTLFLPEHT MLYSSSPIVD SPSKNPKCES MLSSPHPSFS 180 MSQLGQVKSS KGFNDYWLST TKTQPMKYTS TGRRMQNNQV VHKTTNFSSQ GKLYRGVRQR 240 HWGKWVAEIR LPRNRTRVWL GTFDTAEEAA MAYDTAAYML RGEYAQLNFP DQKHAIKANS 300 LNGTTAALLE AKLQAISSQG INSAHKKPTE PPPKIPPKNL LSENIKIQGL SQNTSRKEWQ 360 FELESKVGSG VLIENKKTQE VLSDVDAVQL SRIPSLDMDM IWDALSVSDH L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 229 | 290 | 1 | 63 | ATERF1 |
3gcc_A | 2e-21 | 229 | 290 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023906081.1 | 0.0 | ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A2N9G4S0 | 0.0 | A0A2N9G4S0_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_023072m | 1e-141 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 2e-56 | ERF family protein |