PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold10368-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 707aa    MW: 76829.4 Da    PI: 5.7414
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold10368-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06279299526
                                                           --SGGGGTS--TTTTT-SS-SS CS
                                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                           +C+ f++ G C+ Gd C +aHg
  augustus_masked-scaffold10368-abinit-gene-0.2-mRNA-1 279 PCPEFRK-GSCRQGDACEYAHG 299
                                                           8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.55E-1472150IPR020683Ankyrin repeat-containing domain
PfamPF127967.3E-975142IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01275105IPR002110Ankyrin repeat
PROSITE profilePS5029715.9175150IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.4E-1576150IPR020683Ankyrin repeat-containing domain
CDDcd002046.22E-1477150No hitNo description
PROSITE profilePS5008812.369110145IPR002110Ankyrin repeat
SMARTSM002481.0E-4110142IPR002110Ankyrin repeat
SMARTSM003561.0E-4274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662279301IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944309333IPR000571Zinc finger, CCCH-type
SMARTSM0035631309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MCSGSKRKPS QTGFSMAGGF EKQEALQPRF SVLLELSASD DLTGFKSAVE EEGLDVDESS  60
LWYGRRNGSK IMRFEERTPL MIAAMFGSKG VLNYILETGL VDVNRACGSD GATALHCAVA  120
GGSTCSVEVV KLLLDASADI NSLDAYGKRP GDLITPVSSP ALNSWMKKLE VMLKVFSGIE  180
ETFGLPDQIV DEMEGSEQLE ASSSLGSKDA TEKKEYPVDL SLPDIKNGIY STDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDACEYAHGI  300
FECWLHPAQY RTRLCKDETG CTRRVCFFAH KPEELRPLYA STGSAVPSPR SFSANTSQLD  360
MGSMSPLALG SSSSMMPSNS TPPMTPSGAT SPMGGTMWQN QSSLVPPTLQ LAGSRLKTAL  420
CARDMELDLE LLGLENQRRR QQQLMDEISS LSSPSGWKSP MSNTSAFTAS LGDRIGELNR  480
LGGVKPTNLD DFFGSLDPAL MPQFQALSLD VSAPQLQSPT GAKMRQNMNQ QLRSSYSTGL  540
SSSPVRASSS FGVDPSSAAA ALTSRSAAFA SRSQSFIERS AVNHHSGVSS PRASASVRPS  600
AFSDWGSPDG KLDWGLQGEE LNKLRKSASF GFRSSSSSYA TAAAMMPATV NEPDVSWVQS  660
LVKDVPPAKP GQLNFEKEQQ CHLDTGDSEM LPAWVEQLYK EQEQMVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919371.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2N9HPG50.0A0A2N9HPG5_FAGSY; Uncharacterized protein
STRINGEOY337030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein