PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold09356-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 159aa MW: 18034.4 Da PI: 8.878

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold09356-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	5e-10	47	87	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P K++ +++Le+A++Y+k L augustus_masked-scaffold09356-abinit-gene-0.1-mRNA-1 47 ARERRHRISDRFKILQSLVPGG-----SKMDTVSMLEEAIHYVKFL 87 699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.364	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-14	43	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.73E-14	44	91	No hit	No description
SMART	SM00353	1.7E-12	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-12	44	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-7	47	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDYVSTSTNP SSSGFSSVGN NNKEKKPKGG KRNKGVKLST DPQSVAARER RHRISDRFKI 60 LQSLVPGGSK MDTVSMLEEA IHYVKFLKTQ IWLHQTMINY VDEDPSLYLA GTYLPPQETY 120 YPQNVLVDQV QPSELLPRPI SSSFQCEEPV PFDTNYVKY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023919897.1	1e-108	transcription factor LAX PANICLE 1
Swissprot	Q9M041	7e-31	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A2N9G5E6	3e-77	A0A2N9G5E6_FAGSY; Uncharacterized protein
STRING	cassava4.1_030175m	7e-49	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	2e-32	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]