PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold09341-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 652aa    MW: 73078.1 Da    PI: 6.9156
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold09341-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.31.1e-953226282311
                                                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs 58 
                                                            +lL++cA+ v+ +d+  +++lL+++++++sp+gd ++R+a yf++AL+arla+ ++
  augustus_masked-scaffold09341-abinit-gene-0.3-mRNA-1 322 STLLTQCAQSVAGNDQMTTTELLKQIRQHSSPYGDGTERMAYYFANALEARLAN-QT 377
                                                           579**************************************************9.77 PP

                                                  GRAS  59 elykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHii 115
                                                            ly  ++++e   ++++e l+ ++++  +sP+  +s++ aN++Il+ +e+++r+Hii
  augustus_masked-scaffold09341-abinit-gene-0.3-mRNA-1 378 PLYMPVASNE---YSTAEILKGYQVYISASPFKGMSNFYANRTILKVAEKAKRLHII 431
                                                           7775555444...559***************************************** PP

                                                  GRAS 116 DfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                                                           Df+i +G+QWp+L+q L+ Rp+gpp+l iTg++ p++g   +e++eetg+rL+++++
  augustus_masked-scaffold09341-abinit-gene-0.3-mRNA-1 432 DFGILYGFQWPCLIQRLSVRPGGPPKLHITGIEFPQPGfrPAERVEETGRRLENYCK 488
                                                           *************************************9******************* PP

                                                  GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227
                                                           +++vpfe+nv vak++e+++le+L+++++  ++Vn++++l++++de v+++s+rd v
  augustus_masked-scaffold09341-abinit-gene-0.3-mRNA-1 489 RFNVPFEYNV-VAKKWETIRLEDLKIDRDGLIVVNCMFRLKNIPDEMVAMNSPRDIV 544
                                                           *********9.8********************************************* PP

                                                  GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                                                           Lkl+k+++P+++++   + ++n++ Fl rf eal+++s+lfd+++a++pre++ r++
  augustus_masked-scaffold09341-abinit-gene-0.3-mRNA-1 545 LKLIKRINPEIFIHGVVNGSYNTPFFLSRFKEALYHFSSLFDMFDATVPREDQYRMS 601
                                                           ********************************************************* PP

                                                  GRAS 285 vErellgreivnvvacegaerrerhet 311
                                                            E+++lgr+++nv+aceg er er + 
  augustus_masked-scaffold09341-abinit-gene-0.3-mRNA-1 602 FEKAVLGRDAMNVIACEGLERAERARD 628
                                                           ************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.248295652IPR005202Transcription factor GRAS
PfamPF035143.8E-93322628IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MSNQNLVKGF KDNHEFANPP FNLPTNLHPP SVSSPSSSGS SLDGDSSENS SFSNSVVLKY  60
ITEILLEEDL EGKPCMLQDC LALQAAEKSF YEALGQNYPS SPMQPHPCFN QNAESPDDNF  120
EQSNSIVSTG SYTAVKHSFE FNFNHDQSKL KSSDHIPSPF DTSENSPLVP RLFSDIKSVK  180
QIKQGLPSGS NAFFDWESNQ PVPPEPKETI GEVVPKVPKN GDTLNGSRGQ KNHQDRDNDY  240
TEEGRRNKHP AVYVEEPEPT EMFDKVLLCQ PTVNAVSRAP HEAAASQNGG NEKTEKNGRS  300
KGSTGKTTRS RKHVNKEIVD LSTLLTQCAQ SVAGNDQMTT TELLKQIRQH SSPYGDGTER  360
MAYYFANALE ARLANQTPLY MPVASNEYST AEILKGYQVY ISASPFKGMS NFYANRTILK  420
VAEKAKRLHI IDFGILYGFQ WPCLIQRLSV RPGGPPKLHI TGIEFPQPGF RPAERVEETG  480
RRLENYCKRF NVPFEYNVVA KKWETIRLED LKIDRDGLIV VNCMFRLKNI PDEMVAMNSP  540
RDIVLKLIKR INPEIFIHGV VNGSYNTPFF LSRFKEALYH FSSLFDMFDA TVPREDQYRM  600
SFEKAVLGRD AMNVIACEGL ERAERARDIQ AVASSKSEGR VQAASTKSRA LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4032762325312Protein SCARECROW
5b3h_A3e-4032762324311Protein SCARECROW
5b3h_D3e-4032762324311Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897042.10.0scarecrow-like protein 14
TrEMBLA0A2N9HMU70.0A0A2N9HMU7_FAGSY; Uncharacterized protein
STRINGXP_008222385.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-167SCARECROW-like 14