PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold08639-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 221aa    MW: 24529.4 Da    PI: 8.9555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold08639-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-203786255
                                                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                          +y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++ a+++l+g
  augustus_masked-scaffold08639-abinit-gene-0.3-mRNA-1 37 KYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDTAALSLRG 86
                                                          8********.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3737100IPR001471AP2/ERF domain
CDDcd000182.44E-313794No hitNo description
PROSITE profilePS5103224.1183794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-323795IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-223795IPR016177DNA-binding domain
PfamPF008473.3E-133786IPR001471AP2/ERF domain
PRINTSPR003678.4E-113849IPR001471AP2/ERF domain
PRINTSPR003678.4E-116076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MRRRAPTTAD PTKTATFNQF IRTSTDNNNN NSNNNVKYRG VRKRPWGRFA AEIRDPWKKT  60
RVWLGTFDSA EDAARAYDTA ALSLRGPKAK INFPLTAPQL ATLPAIRDER PRFSSSASTK  120
FHPIQPNRPT TSSMSSTVES FSGPRVVSNP VTRVKIVNPV APDDCRSDCD SSSSVVDDDN  180
DDYCVLTSSF RKIQPFDLNL PPPMDEDFGI GDDLQATALC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-223895664ATERF1
3gcc_A3e-223895664ATERF1
5wx9_A3e-2237941472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874265.11e-110ethylene-responsive transcription factor 3-like
SwissprotQ9SXS86e-39ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A2N9ESW21e-100A0A2N9ESW2_FAGSY; Uncharacterized protein
STRINGXP_007141662.13e-56(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-23ethylene responsive element binding factor 3