PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold08610-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 579aa    MW: 64771.1 Da    PI: 6.15
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold08610-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.44.4e-1332095791374
                                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                                                           l++lL++cA+a+s++ +   ++l ++ ++ +s +g+p+qRl ay++e+L ar   s+
  augustus_masked-scaffold08610-abinit-gene-0.1-mRNA-1 209 LKQLLTACAKALSDNRMDDFDKLTEKARDAVSITGEPIQRLGAYMVEGLVARKEASG 265
                                                           679****************************************************** PP

                                                  GRAS  58 selykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHi 114
                                                           +++y+al+++e +   s++ l+++++++e++P+lkf++++aN aI +a ++e+r+Hi
  augustus_masked-scaffold08610-abinit-gene-0.1-mRNA-1 266 TNIYHALRCREPE---SKDLLSYMHILYEICPYLKFGYMAANGAIADACKNEDRIHI 319
                                                           ************9...9**************************************** PP

                                                  GRAS 115 iDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                                           iDf+i+qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+rLa + 
  augustus_masked-scaffold08610-abinit-gene-0.1-mRNA-1 320 IDFQITQGTQWMTLLQALAARPGGAPHVRITGIDDPFSKyaRGDGLEAVGRRLAAIS 376
                                                           ***********************************9988999*************** PP

                                                  GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserde 226
                                                           +++++p+ef+  v +   d++ ++L+v+pgEalaVn+ lqlh+++desv+++++rde
  augustus_masked-scaffold08610-abinit-gene-0.1-mRNA-1 377 AKFNIPVEFHG-VPEFAPDITRDMLNVRPGEALAVNFPLQLHHTPDESVDVNNPRDE 432
                                                           ***********.799999*************************************** PP

                                                  GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                                                           +L+++kslsPkvv++veqe+++n+++F++rf+ealeyy a+f+s++++lpr+s+eri
  augustus_masked-scaffold08610-abinit-gene-0.1-mRNA-1 433 LLRMIKSLSPKVVTLVEQESNTNTTPFFHRFVEALEYYLAMFESIDVTLPRNSKERI 489
                                                           ********************************************************* PP

                                                  GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                                           +vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +k+l
  augustus_masked-scaffold08610-abinit-gene-0.1-mRNA-1 490 NVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSTYVNSVIKSL 546
                                                           ********************************************************* PP

                                                  GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                           lr ++ + y++ e++g+++lgWk+r+L+s+SaW+
  augustus_masked-scaffold08610-abinit-gene-0.1-mRNA-1 547 LRCYS-EHYNLVEKDGAMLLGWKNRNLISASAWQ 579
                                                           *9999.66*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.367183560IPR005202Transcription factor GRAS
PfamPF035141.5E-130209579IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MDSRQLFGIG VTSAGISFTS SHPSVPSIPN RLLGSLKFDF GNSPNSPFSS HFDSDNLTAL  60
SDGQEQHSST ENLSGVSPSC NSSLESNSYF YRPRPSLDFH QDSQELHSGG TCFIQDANCS  120
PNIKHVLLDI ETALMGPDDS EEVTTREISI PETPVQRSRS WSQEPQGVHV FHPQPSFVPM  180
QQSIEAVHVE KRHKAMDELS LQGFAQGNLK QLLTACAKAL SDNRMDDFDK LTEKARDAVS  240
ITGEPIQRLG AYMVEGLVAR KEASGTNIYH ALRCREPESK DLLSYMHILY EICPYLKFGY  300
MAANGAIADA CKNEDRIHII DFQITQGTQW MTLLQALAAR PGGAPHVRIT GIDDPFSKYA  360
RGDGLEAVGR RLAAISAKFN IPVEFHGVPE FAPDITRDML NVRPGEALAV NFPLQLHHTP  420
DESVDVNNPR DELLRMIKSL SPKVVTLVEQ ESNTNTTPFF HRFVEALEYY LAMFESIDVT  480
LPRNSKERIN VEQHCLARDI VNVIACEGKE RVERHELFGK WKSRLTMAGF RQYPLSTYVN  540
SVIKSLLRCY SEHYNLVEKD GAMLLGWKNR NLISASAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6521657826378Protein SCARECROW
5b3h_A8e-6521657825377Protein SCARECROW
5b3h_D8e-6521657825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913388.10.0scarecrow-like protein 21 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2N9FTB30.0A0A2N9FTB3_FAGSY; Uncharacterized protein
STRINGEMJ158700.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]