PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold08432-abinit-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 232aa    MW: 25986.3 Da    PI: 9.9563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold08432-abinit-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000196183123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          y C+ C++ F++   L  H+++H
  augustus_masked-scaffold08432-abinit-gene-0.1-mRNA-1 61 YICSFCKREFRSAQALGGHMNVH 83
                                                          89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-65887No hitNo description
PfamPF139124.9E-76184IPR007087Zinc finger, C2H2
SMARTSM003550.0066183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.996188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERNNLSNSL KDQIIGTKAI KYCNNNNNDN NKNMPKDSLN SDIQSYGDDY VNGFSWPPKS  60
YICSFCKREF RSAQALGGHM NVHRRDRARL RQSSPPRDGQ YPMLNLNFKS NPNPKFSSSS  120
SLSSTSTRLT PFASSLPSLI SPSLSPFTTP SSASAAGEVK KWGLVGNLFD SLSQKSMDLT  180
NMKNEKSLDR FKQEDKCKIL KKSKIIRLDL EIGVLGDSKE DLDLELRLGY SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-145683229superman protein
2l1o_A4e-145683229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913306.11e-130transcriptional regulator SUPERMAN-like
TrEMBLA0A2I4GCT72e-96A0A2I4GCT7_JUGRE; transcriptional regulator SUPERMAN-like
STRINGVIT_05s0049g00070.t012e-67(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.15e-25C2H2 family protein