PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold08135-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22117 Da PI: 9.7047 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 70 | 120 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+++AeIrdp++ng +r++lg++ ae+Aa a+++a+ k++g augustus_masked-scaffold08135-abinit-gene-0.0-mRNA-1 70 NFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYEAAEDAALAYDKAAFKMRG 120 58*******.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.180.10 | 3.3E-4 | 36 | 83 | IPR029068 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
CDD | cd00018 | 1.37E-29 | 69 | 130 | No hit | No description |
SMART | SM00380 | 1.7E-38 | 70 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 70 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-13 | 70 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-13 | 71 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 71 | 129 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 84 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-13 | 110 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVVYSALRDA VNVGWVPLSQ SNDITATTSM TMMTTATATN NEVDVVDLET THQHAVGEAR 60 EVHVQRSGTN FRGVRRRPWG KYAAEIRDPK KNGARVWLGT YEAAEDAALA YDKAAFKMRG 120 SKAKLNFPHL IGSSSSSECD QPVRVGVKRG SAELSTLTLK PELKKNKFVG SSAAHEAGSN 180 VETLLDVFEL RSAMAKTWPH VIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-31 | 68 | 134 | 3 | 69 | ATERF1 |
3gcc_A | 2e-31 | 68 | 134 | 3 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023878406.1 | 1e-114 | ethylene-responsive transcription factor 13-like | ||||
TrEMBL | A0A2N9EUX3 | 8e-76 | A0A2N9EUX3_FAGSY; Uncharacterized protein | ||||
STRING | Gorai.004G165800.1 | 4e-49 | (Gossypium raimondii) | ||||
STRING | EOX96459 | 4e-49 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 8e-33 | ethylene-responsive element binding factor 13 |