PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold07720-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C3H

Protein Properties

Length: 280aa MW: 30186.9 Da PI: 8.4807

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold07720-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.5	1.5e-10	135	160	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt +Cr + +GtC+yG +C+FaHg+ augustus_masked-scaffold07720-abinit-gene-0.1-mRNA-1 135 KTDICRSWEDSGTCRYGFKCQFAHGK 160 9***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	9.42E-9	133	165	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.7E-6	133	160	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.859	133	161	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-15	134	166	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-8	135	160	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MARLKSTSNL NVSVSQMDKE NNSNNHHLLL GGELLSPSRP PLPPLLRYLR NRSGSPPLPL 60 SPLDNIAWSP NNNSPTPYAM TPIKVDEDGT LVMDGILLPS TGTAGRFSRS STSAADSSPS 120 SSSSSSSSGG RSLNKTDICR SWEDSGTCRY GFKCQFAHGK EELRPPRFSA RNKSDLSINR 180 SKSRFLNQIM AAGGGMTIQT ESPAKLPVDD TSCKIPTTTI SIITSIDDWS PQVDGIEVVL 240 PHSSTAEPPS QKVVDAYIHG ILYGPSTRKR LPVFAEICSE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023879923.1	1e-144	uncharacterized protein LOC111992285
TrEMBL	A0A2N9GLC4	1e-74	A0A2N9GLC4_FAGSY; Uncharacterized protein
STRING	XP_010261083.1	2e-45	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11780	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	2e-09	C3H family protein