PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06954-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 443aa    MW: 50762.9 Da    PI: 6.6352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06954-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012135158123
                                                           EEETTTTEEESSHHHHHHHHHH.T CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                                           y C  Cg+ F +++ +++H +  H
  augustus_masked-scaffold06954-abinit-gene-0.0-mRNA-1 135 YLCRVCGRNFYSNEKFVNHFKQiH 158
                                                           56*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10102.6E-1055139IPR029060PIN domain-like
PROSITE profilePS5015711.344135163IPR007087Zinc finger, C2H2
PROSITE patternPS000280137158IPR007087Zinc finger, C2H2
CDDcd061677.04E-16152287No hitNo description
PfamPF019366.2E-9207292IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.6E-10220287IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MVVLLKFCEL FCTTQLRMLR ILDPFTLLSR SCHFESKPGF NSWGPTSPLR PKITKNNVAI  60
FWDLDNKAPN SFPPYNTAVK LKAAMASFGV VRYMVAYANH HAFTHVPQVV REQRKERKIL  120
NQLENRGVIK TVEPYLCRVC GRNFYSNEKF VNHFKQIHER EQIKRLNQIE SARGKMRVKL  180
VAKYSMKMEK YKNAARDILT PKVGYGLADE LKRAGFWVRT VSNKPQAADV ALKNHMVDMM  240
DRRRVECMVL VSDDSDFVDV LKEAKLRCLK TVVVGDGNDG ALKRVADAGF SWSEILMGKA  300
KKEAESVVGK WKDRDILKRL EWTYNPEVEK KVYDLEDEVV EETQNVDFEG IVSGVVDGNI  360
QEDNKAWWEL DSDGDVSSQS LKRLEWRYNP EVKNNVCSFE DEVAEETENG DFEGIVSGVD  420
DDYMQKEDSI AWSDLGSNVD AVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879630.10.0uncharacterized protein LOC111992064
TrEMBLA0A2N9HN400.0A0A2N9HN40_FAGSY; Uncharacterized protein
STRINGEOY244730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-137C2H2 family protein