PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold06766-abinit-gene-0.1-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 393aa MW: 43469.6 Da PI: 8.5492

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold06766-abinit-gene-0.1-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	156	179	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+ + L++H+ t H augustus_masked-scaffold06766-abinit-gene-0.1-mRNA-1 156 FPCTACGEIFPKPQFLEQHQATkH 179 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.515	156	184	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	158	179	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.28E-14	181	392	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.9E-5	192	298	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
Gene3D	G3DSA:3.90.228.10	1.7E-5	328	392	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MASVVTFVNN FFSIFILLLL HLGCFIFTTT ADDHHQRPYS KKRKVSPLSV SHSSPSKPKK 60 ALSSSWSFVK RIFSSNSCKS NISSITQTQP TTTPPTPITT TTTLSSARSS QHSIVPLIIQ 120 PETHLSDPPR KKKSGSCSES DISADNPFFP LRNDIFPCTA CGEIFPKPQF LEQHQATKHA 180 VSELVDGDSG KNIVRIIFKT GWTDNHKSPV LHRILKIHNS PKILSRFEEY RETVKAKAAR 240 NGAVKRRDER CIADGNELLR FHCSTFLCDL GLNGNSGICN QQYCSVCGIV KSGFSPKLDG 300 ISTLSTSWKA HVAIPEEIEQ EFSFMNVKRA MLVCRVVAGR VGCDSEEVDK EDGGFDSVFG 360 RSGNGVHTSV DEEELLVFNP RAVLPCFVIV YTV

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MASVVTFVNN FFSIFILLLL HLGCFIFTTT ADDHHQRPYS KKRKVSPLSV SHSSPSKPKK  60
ALSSSWSFVK RIFSSNSCKS NISSITQTQP TTTPPTPITT TTTLSSARSS QHSIVPLIIQ  120
PETHLSDPPR KKKSGSCSES DISADNPFFP LRNDIFPCTA CGEIFPKPQF LEQHQATKHA  180
VSELVDGDSG KNIVRIIFKT GWTDNHKSPV LHRILKIHNS PKILSRFEEY RETVKAKAAR  240
NGAVKRRDER CIADGNELLR FHCSTFLCDL GLNGNSGICN QQYCSVCGIV KSGFSPKLDG  300
ISTLSTSWKA HVAIPEEIEQ EFSFMNVKRA MLVCRVVAGR VGCDSEEVDK EDGGFDSVFG  360
RSGNGVHTSV DEEELLVFNP RAVLPCFVIV YTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	43	QRPYSKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023881281.1	0.0	uncharacterized protein LOC111993690
Refseq	XP_023894810.1	0.0	uncharacterized protein LOC112006729
TrEMBL	B9GIT8	0.0	B9GIT8_POPTR; C2H2 family protein
STRING	POPTR_0001s25700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10668	29	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-117	C2H2 family protein