PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold06090-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 241aa    MW: 27917.5 Da    PI: 8.0166
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold06090-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-0688108526
                                                           --SGGGGTS--TTTTT-SS-SS CS
                                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                            C+ f+  G C  Gd+C FaHg
  augustus_masked-scaffold06090-abinit-gene-0.2-mRNA-1  88 ACSAFRT-GKCLKGDTCEFAHG 108
                                                           5777766.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.37183110IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-583109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-584113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-589111IPR000571Zinc finger, CCCH-type
SMARTSM0035619118141IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLKGINPSIY GFSEHQFPSL VHPEFYNTIN NDHIDEAIFG SDEFRMYAYK IKRCPRMRSH  60
DWTECPYAHR GEKAQRRDPR KFSYSAVACS AFRTGKCLKG DTCEFAHGVF EYWLHPARYR  120
TRACNAGRYC QRKVCFFAHT PEQLRSETKY KCHYTYRPRM INGGDGVRDG SNGQEDATKP  180
PLPLPVPVQL EKKHGVESCC CDGVSEFLKS LRGLKIRDVE DNWESSESDL PQIDWISELV  240
Q
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922408.11e-158zinc finger CCCH domain-containing protein 54
SwissprotO650365e-79C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A2N9G8R61e-136A0A2N9G8R6_FAGSY; Uncharacterized protein
STRINGEOY227693e-95(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.16e-82C3H family protein