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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
augustus_masked-scaffold05732-abinit-gene-0.0-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
LBD |
Protein Properties |
Length: 158aa MW: 17926.3 Da PI: 6.8942 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
augustus_masked-scaffold05732-abinit-gene-0.0-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 127.7 | 5.2e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeereda 57
+CaaCk+lrr+C++dC+++pyfp ++p++f +vhk++Gasnv k+l++lp + r++a
augustus_masked-scaffold05732-abinit-gene-0.0-mRNA-1 5 RCAACKYLRRRCPSDCIFSPYFPPNDPQRFSCVHKIYGASNVGKMLQQLPSHLRSQA 61
6******************************************************** PP
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
+++l++eA+ r++dPvyG+vg+i++l+qq++++++++a++++e
augustus_masked-scaffold05732-abinit-gene-0.0-mRNA-1 62 ADTLYFEAQYRLQDPVYGCVGIISRLHQQINSAESQVAKIRAE 104
**************************************99887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 158 aa
Download sequence Send
to blast |
MISGRCAACK YLRRRCPSDC IFSPYFPPND PQRFSCVHKI YGASNVGKML QQLPSHLRSQ 60 AADTLYFEAQ YRLQDPVYGC VGIISRLHQQ INSAESQVAK IRAEISFLNS NAQEVEEPQV 120 DQHIEANSTF INNLLPEQIN TLDLSPYVLP STQTSWFN
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