PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05639-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 357aa    MW: 39109.9 Da    PI: 5.0011
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05639-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1752100355
                                                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                           + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  augustus_masked-scaffold05639-abinit-gene-0.2-mRNA-1  52 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 100
                                                           56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.56E-2851107No hitNo description
PROSITE profilePS5103220.61351108IPR001471AP2/ERF domain
SMARTSM003802.1E-3251114IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2052109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-2852108IPR001471AP2/ERF domain
PRINTSPR003671.3E-75263IPR001471AP2/ERF domain
PfamPF008474.2E-1154100IPR001471AP2/ERF domain
PRINTSPR003671.3E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSTSKTLDKP FQGYEAASSQ VQNGFALIQR NTSPSQPGER RGRRKQAEPG RFLGVRRRPW  60
GRYAAEIRDP TTKERHWLGT FDTAQEAALA YDRAALSMKG TQARTNFIYS DNTTFHSLLA  120
SFDVQAVVPT SSQFLTTTTT THTKQPTNIH QSSTPPKLNN CTRSESEAST QLKNNTCAEI  180
ETSYGVGVAD DNSFFFPNES NSGYLGCIVP DNCLRPSSNP TSTNSKYSNF TTSNDSANTN  240
SIEIQSHYDS HTLPFDLVNV PTAAATASNY PGDFSCLDEL NHGFWDIQQS WESNSSELSA  300
MINNPLMVED GCMGALYPII DNPSYGLIMP QAVASSTTLS PSVSPYSDVV DLGYSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2042107571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098542e-59AP009854.1 Lotus japonicus genomic DNA, clone: LjT18C07, TM1757a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908918.10.0ethylene-responsive transcription factor ERF086
TrEMBLA0A2N9J1420.0A0A2N9J142_FAGSY; Uncharacterized protein
STRINGEOY064471e-145(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.19e-64ERF family protein