PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold05011-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 343aa    MW: 38700.4 Da    PI: 8.2143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold05011-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12165212355
                                                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                           + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  augustus_masked-scaffold05011-abinit-gene-0.2-mRNA-1 165 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 212
                                                           6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.044162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-17165229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-17166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.35E-12167216No hitNo description
SMARTSM003531.2E-14168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEISSIRGLS ELGVEDPRFI NQWQMNSLDE LGILPIAATF GENLQRSFAH PYFSDKNAME  60
TSHSEIDRPM KQHKANSWSS PSKLDHVPTL QVASSPNILS FANANYMNQM NILKPKEEAA  120
CPQSMDTIPT EILTAQGPFG NQNYVYKACQ GAKRLSTSTR LSQTQDHIIA ERKRREKLSQ  180
RFIALSAIVP GLKKMDKASV LGDAIKYLKQ LQERVKTLEE QTKKKNMESV VFVRKSQLFT  240
DGDNSTSDKN SSSDPLDEPL PEIEARFCDK NVLIRIHCEK RKGLLEKSVT EIEKLHLTVI  300
NSSVMTFGSS ALDITIIAQM DEEFCMTVKD LVRNLRSAFK LIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14166226869Transcription factor MYC2
5gnj_B1e-14166226869Transcription factor MYC2
5gnj_E1e-14166226869Transcription factor MYC2
5gnj_F1e-14166226869Transcription factor MYC2
5gnj_G1e-14166226869Transcription factor MYC2
5gnj_I1e-14166226869Transcription factor MYC2
5gnj_M1e-14166226869Transcription factor MYC2
5gnj_N1e-14166226869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERKRRE
2171176RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928807.10.0transcription factor bHLH25-like
TrEMBLA0A2I4GKM40.0A0A2I4GKM4_JUGRE; transcription factor bHLH25-like
STRINGEOX972891e-173(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-67bHLH family protein