PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04973-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 304aa    MW: 34226.9 Da    PI: 9.1723
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04973-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225678123
                                                          EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                                          y+C+ C + F++   L  H+++H
  augustus_masked-scaffold04973-abinit-gene-0.0-mRNA-1 56 YSCSFCRREFRSAQALGGHMNVH 78
                                                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-65383No hitNo description
SMARTSM003550.00985678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEQAQYLMWG KRKHSFNPHT PATPMNSLYN DSWEEQAFAE DAAGPLGGCI WPPRSYSCSF  60
CRREFRSAQA LGGHMNVHRR DRARLKQSPS SCNETQHPNH QNLHNPIQNS FTSLGFQNPS  120
QVRTLVYNPN PNSSDPGTVV SSASPSRVSA SSTQENCSAK SFINPRSSPI VQEHQKRSPI  180
SSSPSWSNLV ADKYYCVSDL KTEEEKNSRF VDSGYRAKGD YVTTDLSVSL NLVVRRTHPT  240
VSSGKDETTD NYKRRRTEPS SLPFFLKPRS VDRQHVQSKV LDVSPNSIED LDLELRLGDR  300
PLVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-135178229superman protein
2l1o_A8e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910745.10.0zinc finger protein 10-like
TrEMBLA0A2N9HZL81e-172A0A2N9HZL8_FAGSY; Uncharacterized protein
STRINGcassava4.1_033522m1e-122(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.19e-32zinc-finger protein 10