PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold04368-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 602aa    MW: 65589.6 Da    PI: 7.5433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold04368-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-1676122148
                                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                           +g WT++Ede l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  augustus_masked-scaffold04368-abinit-gene-0.3-mRNA-1  76 KGGWTAQEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 122
                                                           688*****************************.************986 PP
2Myb_DNA-binding61.91.3e-19128174148
                                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                           +g+WT+eEd++++++v ++G+  W++Ia+ ++ gR +kqc++rw+++l
  augustus_masked-scaffold04368-abinit-gene-0.3-mRNA-1 128 KGPWTQEEDDKIIELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 174
                                                           79******************************.*************97 PP
3Myb_DNA-binding57.53.1e-18180223146
                                                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                           +++WT+eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  augustus_masked-scaffold04368-abinit-gene-0.3-mRNA-1 180 KDAWTPEEELALMKAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 223
                                                           679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.52771122IPR017930Myb domain
SMARTSM007179.3E-1475124IPR001005SANT/Myb domain
PfamPF002492.0E-1476122IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-1477132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-2178134IPR009057Homeodomain-like
CDDcd001675.21E-1279122No hitNo description
PROSITE profilePS5129433.325123178IPR017930Myb domain
SuperFamilySSF466892.36E-32125221IPR009057Homeodomain-like
SMARTSM007176.0E-19127176IPR001005SANT/Myb domain
PfamPF002495.5E-19128174IPR001005SANT/Myb domain
CDDcd001671.50E-16130174No hitNo description
Gene3DG3DSA:1.10.10.608.3E-28135179IPR009057Homeodomain-like
SMARTSM007171.6E-17179227IPR001005SANT/Myb domain
PROSITE profilePS5129424.117179229IPR017930Myb domain
PfamPF002491.5E-16180223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-24180229IPR009057Homeodomain-like
CDDcd001671.42E-13182225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MSSTSIPATT AEATNDEMAG LKLEECCLEN KQSTAASCST SSEGSGSAIV KSPGACSPAP  60
TSPAHRRATG PIRRAKGGWT AQEDETLRNA VAAFKGKSWK KIAEFFPDRS EVQCLHRWQK  120
VLNPDLIKGP WTQEEDDKII ELVSKYGPTK WSLIAKSLPG RIGKQCRERW HNHLNPDIKK  180
DAWTPEEELA LMKAHRIHGN KWAEIAKVLP GRTDNAIKNH WNSSLKKKLD FFLATGQLPV  240
VAKNSPQNGA KDTSRSTAPK NFLVSSNKGS DSTAQSSSGT TDICKTNENS KDQLASSAPP  300
CDMGASLNVI PNNSADSECE EWKAASFNID LSRSNSGLVP KFENSGFNSE AKFENCATNS  360
KPTIDNCGIN DEPMFERCAI NSEIDEKFIG TPLTSETPTY GSLYYEPPQL EGCNPLDSDF  420
LKLCYINSSP ILSPIRFFTP PCVKSGGLSM QSPESILKMA AESFPNTPSI FRKRKTEGQK  480
HLHTDKIAKA DKELVKDVVH ASDEQKIINS LETSESQDGS LCESPTCHGN SIAGANGKAF  540
NASPPYRLRS KRTAVLKSVE KQLEFTFDKE KCDGNTKSME LSTKGSSPVT EDCSHAAKIG  600
VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-70752295159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-70752295159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880621.10.0transcription factor MYB3R-3-like
SwissprotQ6R0321e-164MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2N9HV100.0A0A2N9HV10_FAGSY; Uncharacterized protein
STRINGVIT_08s0007g00360.t010.0(Vitis vinifera)
STRINGEMJ096420.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-157myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]