PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold03797-abinit-gene-0.0-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 371aa MW: 41215.5 Da PI: 4.6392 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g augustus_masked-scaffold03797-abinit-gene-0.0-mRNA-1 109 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 158 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.1E-37 | 109 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 109 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.092 | 109 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 109 | 168 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.12E-32 | 109 | 167 | No hit | No description |
Pfam | PF00847 | 8.3E-12 | 110 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MCGGAIISDF IAPAGPRRLT ADYLWGDRKI PTSGRKFSKP VVDIDDDFEL DFQGFKDDDE 60 SDIDEEEVLV QDVKPFAFSA PRSSGSKPVK SVEFNGQAEK SAKRKRKNQY RGIRQRPWGK 120 WAAEIRDPRK GVRVWLGTFN TAEEAARAYD AEARRIRGKK AKVNFPDETP RASPKRSVKA 180 NLQKPLAKAN LNQNFSLANN SDQDFTMGLM EEKPFTNQYG YMDSIPVNAD VGLKRFASPH 240 TGPVYFSSDQ GSNSVDCSDY GWGEQGPKTP EISSVFSASV EGDNTRFLED ANPPKKLKSD 300 SGNAVFVEDN TAKTLSEELS AFENSNFQIP YLDGSWDESI EALFSGDTTQ DGNQMDLWSF 360 DDLSVIVGGD F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 109 | 168 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF755969 | 0.0 | JF755969.1 Castanea sativa ethylene transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023927846.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_023927847.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_023927848.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 3e-87 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A0M4GX58 | 0.0 | A0A0M4GX58_QUERO; Ethylene response factor 1 | ||||
STRING | XP_009338318.1 | 1e-168 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 3e-89 | related to AP2 12 |