PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold03750-abinit-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 280aa MW: 31677.3 Da PI: 5.5304

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold03750-abinit-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125	3.8e-39	23	122	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeereda 57 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++a augustus_masked-scaffold03750-abinit-gene-0.2-mRNA-1 23 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNQPDKDEA 79 7****************************************************** PP DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 m+++++++++ra+dPv G++++i++lq+ +e kael+ + ++ augustus_masked-scaffold03750-abinit-gene-0.2-mRNA-1 80 MRTIIFQSDVRANDPVGGCYRIIRELQRLIEYNKAELDIVLHQ 122 ***********************************988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.538	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-36	23	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MNINNNSTTT TTTTRHGNGT TQACAACKYQ RRKCAPDCIL APYFPHDRQR QFLNAHKLFG 60 VSNITKIIKN LNQPDKDEAM RTIIFQSDVR ANDPVGGCYR IIRELQRLIE YNKAELDIVL 120 HQLAICRAQA HQQQQMSEAT DPTINCEMVG VDPLSSYNNA LQYHYLGPHQ QEQYFVVNNH 180 LQEDVNAWTT VQDSASTLSS LHVNKHGPES ECDDVKPVFD VSCERNEIKF EPEELIARSD 240 EVTLRIDNAT LKEDDGSIQQ AQDHDLKGAA TLFTLTNCNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-25	19	117	7	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-25	19	117	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216467	9e-71	AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023929235.1	0.0	LOB domain-containing protein 22-like
Swissprot	Q9LRW1	2e-68	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2I4EQF7	1e-143	A0A2I4EQF7_JUGRE; LOB domain-containing protein 22-like
STRING	cassava4.1_022118m	1e-101	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-70	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]