PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03278-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 236aa    MW: 26014.8 Da    PI: 4.5722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03278-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-172575155
                                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                                          s++kGVr +k +g++v+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  augustus_masked-scaffold03278-abinit-gene-0.4-mRNA-1 25 SKFKGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALFCLRG 75
                                                          79*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-192584IPR016177DNA-binding domain
PfamPF008471.2E-92575IPR001471AP2/ERF domain
CDDcd000181.37E-282585No hitNo description
Gene3DG3DSA:3.30.730.108.7E-282684IPR001471AP2/ERF domain
PROSITE profilePS5103220.9432683IPR001471AP2/ERF domain
SMARTSM003805.4E-322689IPR001471AP2/ERF domain
PRINTSPR003672.8E-82738IPR001471AP2/ERF domain
PRINTSPR003672.8E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVKQNIEKPT KTTATIVEQR SESNSKFKGV RKRKWGKYVS EIRLPNSRER IWLGSYDSAE  60
KAARAFDAAL FCLRGRAAKF NFPNNPPEIP GGRSLKAAEI QAAAAKFANS ESEPPKSESN  120
SGHLLEIMNN NNNSSSSLLT SPTVSEATVE TVQMDSDSIS TNNLDGSFLD LDLDLDLDFL  180
KTMGSSNYGS DYGIFPGFDD LTNGLFSQPL PNVDYGEENL DGIVSQESFN SFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1724841273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12733KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922672.11e-135ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-53ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2I4HQR58e-92A0A2I4HQR5_JUGRE; ethylene-responsive transcription factor ERF017-like
STRINGXP_006474695.15e-81(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]