PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold03263-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 407aa    MW: 45292.8 Da    PI: 8.3299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold03263-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07233255123
                                                           EEETTTTEEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                           + C+ Cgk F+r  nL+ H+r H
  augustus_masked-scaffold03263-abinit-gene-0.0-mRNA-1 233 HYCQVCGKGFKRDANLRMHMRAH 255
                                                           68*******************99 PP
2zf-C2H210.70.0016328351123
                                                           EEETTTT.EEESSHHHHHHHHHHT CS
                                               zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                                           y+C+ C+ k Fs  s+L++H + +
  augustus_masked-scaffold03263-abinit-gene-0.0-mRNA-1 328 YVCKRCNqKQFSVLSDLRTHEKHC 351
                                                           9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.35E-6231258No hitNo description
PROSITE profilePS5015712.653233260IPR007087Zinc finger, C2H2
SMARTSM003550.0034233255IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-6233259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SMARTSM0035575290323IPR015880Zinc finger, C2H2-like
SMARTSM0035523328350IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLSGANTTSC FQNVPLQIYS VNEDVVSASP LEGNSASESH PNNFLYNFSV LKEKVHQVQS  60
LVSILINTDH SQPEPATSFA VASLGTMIQE IISSATSMMF ICQQMGLGPT AAGSTSTDEL  120
HHGHHGQRHQ TRFYQPNFGG NRAGNIGQER GQGFFSSETL ADCWYGGETF NNYGTNKEET  180
RSGAVGNNVN RVERSDQVAQ GGDTSEAILE RITSEDYDIV ELDAADLLAK YTHYCQVCGK  240
GFKRDANLRM HMRAHGDEYK TSAALSNPMK NNNGGASGNR DGLLKLPRKY SCPQEGCRWN  300
RKHAKFQPLK SMICVKNHYK RSHCPKMYVC KRCNQKQFSV LSDLRTHEKH CGDQKWQCSC  360
GTTFSRKDKL MGHVALFIGH NPATISLSKL AKVEQQTVQM QIDDRHR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875992.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
RefseqXP_023875993.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-111STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2N9EY860.0A0A2N9EY86_FAGSY; Uncharacterized protein
STRINGEOY336791e-169(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-114C2H2 family protein