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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | TCP | ||||||||
Protein Properties | Length: 389aa MW: 41408.1 Da PI: 6.4738 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 81.4 | 2.4e-25 | 1 | 92 | 24 | 89 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssss 81 ++a+caar+F+L++eLG+++d++tieWLlqqa+pai+ +tgt++++a+++ ++s +ss augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1 1 MPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIITATGTGTIPANFStLNVSLRSS 59 9**********************************************999888888888 PP TCP 82 asnsssg.........................k 89 +s+ s++ + augustus_masked-scaffold02650-abinit-gene-0.6-mRNA-1 60 GSTLSAPpsksaphsfhgalalahhpyheegfA 92 885555544445555555555555555544442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.086 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-26 | 1 | 111 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIITAT GTGTIPANFS TLNVSLRSSG 60 STLSAPPSKS APHSFHGALA LAHHPYHEEG FAHPAFLGFH QHQQQQHQQH LMTADQIAEA 120 LPSGGGGDSG GAGDSTENYM RKRFREDLFK EDTQPNESGA SGSGGGDDES PNKYSKTGLQ 180 ISKQQQQQQQ QQQDSVTAGS SGLLRPSNIL PATAMWAVAP APTSGTGSTF WMLPVTAGGS 240 GGPSVATATS GAGPSESSHM WTFPAATSGN TLQAPLHFMP RLNFPGSLEF QQGNNSSRGS 300 PLQLGSMLMP QHQQQPSQHL GLGVSESNLG MLAALNAYSR GGLNMNSDHQ QSHALEHHHH 360 HHHHHQQQQQ HQQQPQATDS GDEDPENSQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023885446.1 | 0.0 | transcription factor TCP8-like | ||||
TrEMBL | A0A2N9HI21 | 1e-179 | A0A2N9HI21_FAGSY; Uncharacterized protein | ||||
STRING | EOX97160 | 1e-164 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 3e-56 | TCP family protein |