PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ERF

Protein Properties

Length: 234aa MW: 25392.1 Da PI: 6.5262

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold02480-abinit-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.5	7e-13	77	121	6	55
AP2 6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++g+Wv+eIr p+ + +r++lg++ t ++Aa a++ a+++l+g augustus_masked-scaffold02480-abinit-gene-0.3-mRNA-1 77 A--RSRSGKWVSEIRQPR----KaTRIWLGTYPTQDMAATAYDVAALALKG 121 5..5789*******84....36**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.03E-25	72	131	No hit	No description
SuperFamily	SSF54171	1.63E-16	73	130	IPR016177	DNA-binding domain
SMART	SM00380	4.2E-24	73	135	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.0E-24	73	130	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.612	73	129	IPR001471	AP2/ERF domain
Pfam	PF00847	1.7E-7	78	121	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MAKNPSNVRR NNPYRTTNVR REETTLNSHT TATISTSSST ITTATSPISV SEGFSGQTGS 60 SPSSSSTTTK HKKFRGARSR SGKWVSEIRQ PRKATRIWLG TYPTQDMAAT AYDVAALALK 120 GPDTVLNFPD LILWYPIPLS TSPVDIRAAA ACAAEAMMER SSESGSAFHG ATHLRRSDED 180 YFIDEEELLN MPSLLVNMAE GMLLTPPRIQ SKSSSDESGG DENGDGDGLW SYAY

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00558	DAP	Transfer from AT5G52020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023925372.1	1e-123	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	4e-45	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A2I4EMW5	3e-56	A0A2I4EMW5_JUGRE; ethylene-responsive transcription factor ERF027-like
STRING	VIT_16s0100g00400.t01	3e-55	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	6e-35	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]