PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold02294-abinit-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 79aa MW: 8621.62 Da PI: 5.6128 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 36.6 | 1.3e-11 | 3 | 50 | 53 | 100 |
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 r a++++ +e++ r++dPvyG+vg+i++lq+q+ +++el+++k+e augustus_masked-scaffold02294-abinit-gene-0.5-mRNA-1 3 LRAVAADCMSFESRSRVEDPVYGSVGIITQLQEQIIAAQSELVKTKDE 50 58899**************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.211 | 1 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-9 | 3 | 48 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MHLRAVAADC MSFESRSRVE DPVYGSVGII TQLQEQIIAA QSELVKTKDE IAFHNAQRTT 60 TTTTTNAAAA NDSCYCPRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023892503.1 | 2e-27 | LOB domain-containing protein 24-like | ||||
TrEMBL | A0A2K1YZY8 | 2e-17 | A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010270541.1 | 5e-17 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 1e-12 | LOB domain-containing protein 23 |