PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02246-abinit-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 319aa    MW: 34798.4 Da    PI: 4.8024
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02246-abinit-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.11.1e-29161214155
                                               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                                           +prl+Wtp+LH+rFv++v +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  augustus_masked-scaffold02246-abinit-gene-0.8-mRNA-1 161 RPRLVWTPQLHKRFVDVVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 214
                                                           59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-19158218IPR009057Homeodomain-like
PROSITE profilePS5129410.26158217IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-29160218IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-23162214IPR006447Myb domain, plants
PfamPF002494.4E-7164213IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MLMKMSEYEF GGGDEDRVTE WEVGLPGVDD LTPLSQLLIP AELASAFSIS PEPYRTAVEV  60
NRASQTTFST IRGVNHTTAK GSLFETTNPD PDPDQDPMVL EADENEITNR DGSGSDLKRS  120
RNKDDECCVE IEVEEADSAL RNNENDDDES AAAEEARTVK RPRLVWTPQL HKRFVDVVGH  180
LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRQQ GGSGGGGGGG GGGGGGGLFS  240
DGPSSTSTST SDHLFASTTP HMPNYHMPTM MPQMLGHMGM PPMGGGHHHH PYNMFQQQQQ  300
QSMNSNYQYG SHPVAPNEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-35161217157Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920684.11e-150transcription factor PCL1-like
RefseqXP_023920685.11e-150transcription factor PCL1-like
RefseqXP_023920686.11e-150transcription factor PCL1-like
TrEMBLA0A2N9HV141e-121A0A2N9HV14_FAGSY; Uncharacterized protein
STRINGVIT_06s0004g05120.t018e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.27e-60G2-like family protein