PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01940-abinit-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 198aa MW: 22559.6 Da PI: 9.6209 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.5e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ +++++G g+W++ ++ g++R++k+c++rw +yl augustus_masked-scaffold01940-abinit-gene-0.3-mRNA-1 13 KGAWSQEEDQKLIAYIQKHGEGCWRSLPKAAGLRRCGKSCRLRWINYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.9e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ augustus_masked-scaffold01940-abinit-gene-0.3-mRNA-1 66 RGNFEEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNHWNSH 110 899*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-25 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.952 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-29 | 12 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.80E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 27.073 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.55E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MRKPCCKKEE TNKGAWSQEE DQKLIAYIQK HGEGCWRSLP KAAGLRRCGK SCRLRWINYL 60 RPDLKRGNFE EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNHWNSH IRKKLTQMGI 120 DPNKPHKLGG TASFTGISFF SQNQAPNPVN VRRDDNQILG FESGVESNKT SCVPDLNLDL 180 TLSTPTSTLV EERQQPKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-30 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023878006.1 | 1e-143 | myb-related protein 308-like | ||||
Swissprot | P81393 | 7e-76 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2N9H6M5 | 1e-114 | A0A2N9H6M5_FAGSY; Uncharacterized protein | ||||
STRING | XP_010274638.1 | 1e-87 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-72 | myb domain protein 4 |
Publications ? help Back to Top | |||
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