PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 278aa    MW: 31445.4 Da    PI: 8.9895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.7e-34481881128
                                                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpk 49 
                                                           lp+G++F+Ptd+e++ e+L+ kv+++ ++l+        +++   +i++++P++Lp 
  augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1  48 LPAGVKFDPTDQEIL-EHLEGKVQSDACKLHPlidefipTLEGEnGICYTHPEKLP- 102
                                                           799***********9.99*********5553333333222333336**********. PP

                                                   NAM  50 kvkaeekewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelv 100
                                                            v+++    +fF++ +k+y+tg+rk+r+++      + +W++tgk++++l+ +g+++
  augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1 103 GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtdieggETRWHKTGKTRPILV-SGKVK 158
                                                           555666688******************744456555778************.999** PP

                                                   NAM 101 glkktLvfy..kgrapkgektdWvmheyrl 128
                                                           g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  augustus_masked-scaffold01826-abinit-gene-0.0-mRNA-1 159 GYKKILVLYtnYGKQRKPEKTNWVMHQYHL 188
                                                           *********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-3843207IPR003441NAC domain
PROSITE profilePS5100533.1948207IPR003441NAC domain
PfamPF023651.3E-1549188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTQCNERGDN QTILDTKSKD NPIRTCPSCG HQIKCQDKQA GIHDLPGLPA GVKFDPTDQE  60
ILEHLEGKVQ SDACKLHPLI DEFIPTLEGE NGICYTHPEK LPGVSKDGLV RHFFHRPSKA  120
YTTGTRKRRK VHTDIEGGET RWHKTGKTRP ILVSGKVKGY KKILVLYTNY GKQRKPEKTN  180
WVMHQYHLGN NEEEKDGELV VSKVFYQTQP RQCGSFIKES LSSKSKGQNG HEDGNLRTNA  240
FFEYYNSSLI AFEQGNQNRA STPQLLSHFA VHNGSFIP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886067.10.0NAC domain-containing protein 73-like isoform X1
RefseqXP_023886068.10.0NAC domain-containing protein 73-like isoform X2
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2N9EM070.0A0A2N9EM07_FAGSY; Uncharacterized protein
STRINGEOX995341e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-126NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]