PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01690-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 266aa    MW: 28759.2 Da    PI: 7.7785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01690-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-071446132
                                                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
                                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                                                          +g+W++eEd  l+ + + +G+g +W t + + g
  augustus_masked-scaffold01690-abinit-gene-0.6-mRNA-1 14 KGPWSPEEDATLKSYLQNHGTGgNWMTLPTRAG 46
                                                          79***********************99888776 PP
2Myb_DNA-binding27.11e-08871102246
                                                           T-HHHHHHHHTTTS-HHHHHHHHHH CS
                                       Myb_DNA-binding  22 gtWktIartmgkgRtlkqcksrwqk 46 
                                                           g W+ Ia+ ++ gRt++++k++w++
  augustus_masked-scaffold01690-abinit-gene-0.6-mRNA-1  87 GKWSFIASQLP-GRTDNEVKNHWNT 110
                                                           56*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-20535IPR009057Homeodomain-like
PROSITE profilePS500909.1649112IPR017877Myb-like domain
SMARTSM007171.7E-1313114IPR001005SANT/Myb domain
PfamPF002492.1E-51445IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-1014113IPR009057Homeodomain-like
CDDcd001675.85E-781110No hitNo description
PfamPF002491.5E-683110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2088115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKSYLQ NHGTGGNWMT LPTRAGDVAR VAVYDGSIIS  60
GQTSSMEVSL KRKTTLSVPS IAKWEVGKWS FIASQLPGRT DNEVKNHWNT KLKKKKQLTI  120
NNEKSPPNNP TLYGSTPTTS LQTCVPKAET YSFGISASQS QNHTDVIPRL STKFNSLSSD  180
PIPLYCPGLI DVSEVGASSK NSTCDVSLSQ ESSCISNSYS IGLVTSVSMA GNVEVEDSKA  240
LVDFSFGSPY GLGNNLYMAD FTYPEY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903759.11e-135transcription factor RAX2-like
TrEMBLA0A2I4FSA32e-52A0A2I4FSA3_JUGRE; transcription factor RAX2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-33myb domain protein 84