PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01539-abinit-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 151aa    MW: 16476 Da    PI: 8.8277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01539-abinit-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-192676255
                                                    AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                                           +y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g
  augustus_masked-scaffold01539-abinit-gene-0.13-mRNA-1 26 RYRGVRRRP-WGKFAAEIRDS---NrHGARVWLGTFNTAEEAARAYDRAAYAMRG 76
                                                           6********.**********4...3234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.8282684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-312686IPR001471AP2/ERF domain
SMARTSM003801.6E-342690IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-232685IPR016177DNA-binding domain
PfamPF008471.3E-152676IPR001471AP2/ERF domain
PRINTSPR003671.0E-112738IPR001471AP2/ERF domain
CDDcd000182.70E-123485No hitNo description
PRINTSPR003671.0E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MHANMAEDPS RGKARDDSKE GGDGVRYRGV RRRPWGKFAA EIRDSNRHGA RVWLGTFNTA  60
EEAARAYDRA AYAMRGSLAI LNFPNEYPLT SGGASGSSSS SASASASASA SSSTREGARI  120
GQQGRQVFEF EYLDDKLLEE LLDYDEKTSK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-39201373114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883906.12e-58ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059D1V21e-52A0A059D1V2_EUCGR; Uncharacterized protein
STRINGXP_010039174.12e-53(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.15e-16ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]