PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01516-abinit-gene-0.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB

Protein Properties

Length: 275aa MW: 31284.5 Da PI: 7.6596

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01516-abinit-gene-0.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.2e-17	14	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 rg+WT+ Ed+ll+d++k +G g+W +I+++ g ++R++k+c++rw++yl augustus_masked-scaffold01516-abinit-gene-0.6-mRNA-1 14 RGAWTALEDQLLIDYIKNHGEGRWGKIPKETGkfqnfsLKRCGKSCRLRWLNYL 67 89**************************************************97 PP
2	Myb_DNA-binding	51.7	2.1e-16	73	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ augustus_masked-scaffold01516-abinit-gene-0.6-mRNA-1 73 RGNITQDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 117 7999****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.5E-23	5	70	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.113	9	67	IPR017930	Myb domain
SuperFamily	SSF46689	3.22E-28	12	114	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-14	13	69	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-15	14	67	IPR001005	SANT/Myb domain
CDD	cd00167	7.03E-10	16	67	No hit	No description
PROSITE profile	PS51294	25.99	68	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-25	71	122	IPR009057	Homeodomain-like
SMART	SM00717	6.9E-16	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	73	117	IPR001005	SANT/Myb domain
CDD	cd00167	2.44E-10	77	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGRSPCCEKS GLNRGAWTAL EDQLLIDYIK NHGEGRWGKI PKETGKFQNF SLKRCGKSCR 60 LRWLNYLKPD IKRGNITQDE EDLILRLHKL LGNRWSLIAG RLPGRTDNEI KNYWNSTLRK 120 KLQANHSELP KIEKKSIKGK SNDATPSLKI EPCLTTSKPT RCTKDEEVDR NTLVEEPSIE 180 GVMEKSKEAN SDSRDGLLPI TCENDMPWNF IADLNPGQFS LTEFLHADFT KLSELNSMIV 240 EDCNNGCIKG SSPSSSEETP MFTDEMLKNW ARDSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-29	12	122	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023899955.1	0.0	transcription factor MYB8-like
TrEMBL	A0A2N9EU14	1e-143	A0A2N9EU14_FAGSY; Uncharacterized protein
STRING	XP_008220565.1	1e-108	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-59	myb domain protein 3