PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01432-abinit-gene-0.14-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NF-YA

Protein Properties

Length: 319aa MW: 34652.4 Da PI: 9.1825

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01432-abinit-gene-0.14-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.2	1e-31	165	219	3	58
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVN+KQy++Il+RRq+Rakle+++kl k+rkpylheSRh+hAl+R Rg+gGrF augustus_masked-scaffold01432-abinit-gene-0.14-mRNA-1 165 PIYVNPKQYHGILRRRQSRAKLEAQNKL-VKARKPYLHESRHRHALNRTRGTGGRF 219 9*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.3E-36	161	222	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.439	162	222	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.6E-27	165	219	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-23	165	187	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-23	196	219	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MPHLTVKCSS WWNSNEQKIP SSSSKTASLK MDSPRQQSHE AKHLGLQLPD QESSTIQFTG 60 QSHHEVGAVG GTNSQGQCIS SESDQDEGCG KDAKGQMKAG FLLNNSDFMF NPSQVAHSYS 120 MARVPYPYAE PCFGGLLTSY GPQAIMMGMA PARVPLPLDF TDYGPIYVNP KQYHGILRRR 180 QSRAKLEAQN KLVKARKPYL HESRHRHALN RTRGTGGRFL STKKGQNPDP TATSSNHYVS 240 DTENMSDFDS SQFGTGQHVG SITACSDITS VSNRNGNGNN TYQQPGHRFS GLSPNLGGAM 300 QCNGSLVSGG TQHCASVVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	165	228	4	67	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023911867.1	0.0	nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBL	A0A2N9J0I4	0.0	A0A2N9J0I4_FAGSY; Uncharacterized protein
STRING	EOY30324	1e-127	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6949	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-51	nuclear factor Y, subunit A3