PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01416-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 357aa    MW: 40032.2 Da    PI: 5.4024
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01416-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.9e-30132192259
                                                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES- CS
                                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYege 55 
                                                           dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++eitY+g+
  augustus_masked-scaffold01416-abinit-gene-0.6-mRNA-1 132 DDGYSWRKYGQKDILGAKYPRSYYRCTFRitqNCWATKQVQRSDEDPNLFEITYRGR 188
                                                           8**************************99999************************* PP

                                                           -SS- CS
                                                  WRKY  56 Hnhe 59 
                                                           H+++
  augustus_masked-scaffold01416-abinit-gene-0.6-mRNA-1 189 HTCS 192
                                                           **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.32126189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-29127193IPR003657WRKY domain
SuperFamilySSF1182903.66E-26130193IPR003657WRKY domain
SMARTSM007743.9E-40131193IPR003657WRKY domain
PfamPF031061.8E-26132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MENGWSWEQK TVISELIQGM ELAKQLRVQF SDTSSSPETT DMLLQRILNS YEKALLILRW  60
SGPVGQSHTM GVTGGVPGSP ISVNGSPGSD EFEKGLKDQQ ELNDASKKRK ILPRWTDQVR  120
VNSGTGLEGP HDDGYSWRKY GQKDILGAKY PRSYYRCTFR ITQNCWATKQ VQRSDEDPNL  180
FEITYRGRHT CSHATNLVPA PSSPEKQEQK HNNNNNDNQQ KQSLDILSTI RNNLRVATEN  240
LDNREMAHPF SFPSTSFGCM KSENSHFSLS ELDNSTLLGG FPQPFLSQAS PESNYFTASP  300
FQVSNFGGVH MQFSNSESEI ISAHTSTTNS PILDIDFSLD PVEIDPNFPF DTPGFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-191331891874Disease resistance protein RRS1
5w3x_D5e-191331891874Disease resistance protein RRS1
6ir8_A3e-19132191968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815563.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A2N9H0570.0A0A2N9H057_FAGSY; Uncharacterized protein
STRINGGorai.004G134600.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-69WRKY family protein