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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold01309-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 28060.5 Da PI: 4.1419 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 4 | 52 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g augustus_masked-scaffold01309-abinit-gene-0.2-mRNA-1 4 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 52 56******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.20E-30 | 3 | 59 | No hit | No description |
PROSITE profile | PS51032 | 20.692 | 3 | 60 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-33 | 3 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 4 | 61 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-28 | 4 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-8 | 4 | 15 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-12 | 6 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-8 | 26 | 42 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MWRFLGVRRR PWGRYAAEIR DPSTKERHWL GTFDTAEEAA LAYDRAARSM RGLRARTNFV 60 YSDMPPGSSV TSIVSPDEPQ QNFFDVPPPS STPTQPDPTP QTYSNQETNT EFSYSSMSDI 120 GGDQFWASSS SSSVYYQQQP ALFGFDNNIS STASVSHNYS NQMCDQLPPF PSDISGDIGS 180 NMSVADSSED MGQAAWSDST SLSTGLEPVG NGSYSYMGMG FDSSEYVHSP LFSRMPPVSD 240 NVPESFNLGS SAFFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-19 | 4 | 59 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023879910.1 | 1e-162 | ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A2N9HUV0 | 1e-112 | A0A2N9HUV0_FAGSY; Uncharacterized protein | ||||
STRING | XP_006446887.1 | 7e-76 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-44 | ERF family protein |