PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01299-abinit-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 232aa    MW: 26382.8 Da    PI: 5.1312
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01299-abinit-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.8e-10122227296
                                                           EEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS.-EEE CS
                                                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesg.rsWe 47 
                                                            k+lt+sd ++s+rl +p + + +h          ++++ ++  +t+ d+++   +e
  augustus_masked-scaffold01299-abinit-gene-0.0-mRNA-1 122 TKTLTKSDIGSSSRLLVPQSLVHAHimaffsadsvKKIECSGLSVTVFDRDSkSDYE 178
                                                           699*****************************8886666678889999977736799 PP

                                                           EEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE-.SSSEE..EEEE CS
                                                    B3  48 vkliyrkksgryvltkGW.keFvkangLkegDfvvFkld.grsefelvvkv 96 
                                                           + ++ + +s++yv+ + W ++Fv   +Lk+gD++ ++ d  +s+f  ++ v
  augustus_masked-scaffold01299-abinit-gene-0.0-mRNA-1 179 LVFKKWPSSKSYVFNGKWhEDFVARRKLKVGDIIGLYWDpCHSKF--NFCV 227
                                                           99999*************446****************65333555..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.98E-18119228No hitNo description
SuperFamilySSF1019368.63E-14119227IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.5E-4121231IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-14121225IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-7122226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MIPITQNLLQ TLENQNTQNY STDLTLSCEL QTELNACNEE EEEEAMILDD DGTQNLLQTL  60
ENQNTQTLSC VFNIKQEQKE VSTALTLFDK PWVSSNTMRK STQKDEYATA TKLSAVSPWK  120
ITKTLTKSDI GSSSRLLVPQ SLVHAHIMAF FSADSVKKIE CSGLSVTVFD RDSKSDYELV  180
FKKWPSSKSY VFNGKWHEDF VARRKLKVGD IIGLYWDPCH SKFNFCVLQT AQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880111.11e-133B3 domain-containing protein At2g33720-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.12e-30B3 family protein